Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1162 ATGGATCGAGAGTGGGGTTCAAAGCCTGGGAGTGGAGGAGCCGCCTCCGCTCAGAATGAAGCCATCGACCGTCGAGAGCGTCTTCGCAGACTTGCCCTGGAGACTATTGATCTTGCTAAAGACCCATATTTCATGCGCAATCATCTGGGGAGCTATGAGTGCAAGCTCTGTCTCACCCTACACAACAACGAGGGCAATTACTTGGCCCACACACAGGGTAAGCGGCATCAGACTAATCTGGCAAAGAGAGCAGCTCGTGAGGCCAAAGAGGCACCTGCTCAGCCTCAGCCCCACAAGCGTAAAGTCTCAGTTCGCAAGACAGGTAATTCTTTCTTAGAAATGTATCAAGAAGTGCACATAGTTCTTTGTGCAAATTGTCGTAGTGCTCTTGGTTTGAGTTTAACCGAAACTTCCGCCTTTGTGCTAAACCTAGGAACAGGGAAGATTGGTCGGCCTGGGTACCGTGTGACTAAGCAATTTGATCCCGAGACAAAGCAGAGATCTCTTCTTTTCCAGATTGAATATCCTGAGATTGAAGAACTCACAAAGCCAAGGCATAGATTCATGGTTCAATCCTTCGACAAAAGATACCAATATCTCTTGTTTGCAGCTGAACCGTATGAGATAATTGCTTTTAAGGTTCCTAGCACGGAGATTGATAAGTCCACACCAAAGTTTTTCTCACATTGGGACTCAGACTCAAAAATGTTCACGTTGCAGTTGTATTTCAAACCCAAGCCACCAGAGGCAAACAAACCACAGCCTCCCTCTATAGCCAATGACACAGCAGCACCTGGTGTACCGCCAAGGCCTGCGCTGCCACCACCTCCTCCACCACAAGGACTACCTCCTGGTGCAGCTGTTGGAAATCCTCCTAGAGCCCCTCCGCCTCCAATGCCTGGATCATTGCCTCCGCCTCCTCCTCCTATGTCAAATGGCCCTACCCCTGCACCTCCTGGCGGAATGCCACCTCAGCCCCCTGTTAGTGGCTCAGCAGCTAGTTTCAACATGGGTTCTAGGCCCACATCAATGCCACCTCCCCAAAATTACTTAGCCCAACAAATGCAAGGCCAGGGTGTAACTGATGTTGTTTTCGTGAATTCTGGGAAAAAGCTTGTGAGTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATCTTGATACCCAGCACTGTATGCAAATCGTTGGTGGTCATCAGGGTGAAATATGGTCCATAGACGTTGATCCAAATGAAAGGTACTTGGTCACCGGTTCTGCAGATAAGGAACTTCGATTTTACGCACTTAAGCATGACTCAGTGAATGATCAGTCTAGAAATGGAGACAATGCTGTTGGCAACGGAGATTCATCAATTCAAAACAAATGGGAAGTTTTGGGATATTTTGGTGAAATTCAGCTGCAAAACAGGGATAGAGTCGCAACTGTGCAATTCAACAAGTCAGGGAATTTGTTAGCTTGTCAAGTTGCTGGAAAGACAGTAGAAATGTACCGTGTTACAGAAATTGAGGATAGGCAAAATGAGAATGCAGCAGGAGAGAATGCTGTCACAACTGAACAACCTAATGAAGCATTTAACCCTACTGTTACCATACCAGATGTTTTTAAGCTGCTTCATACCGTAAGAGCTAGCAGAAAGATATGCTCCATTTCTTTCTGTCCAATTACTCCTAAGAATTCTCTGGCAACTTTGGCTGTGTCTTTGAATAATAATTTACTGGAGTTCTACTCTATTGATAATGAAGTCAAGGGCACGGTTCAGACGTTAGAAGCTAGAAAGCAGCTTAGTGTGTCAAATGTGAGGACTCTGAAAATGAATCAGGACGTTCTTGTGGTTGCGACAAGCCCTGATGCTAAATATATTGCTGTTGCCATTCTAGATAATTCTATACAGATTTACTTTCTTGACAGATTAAATTTCTTTAATTCCTTATACGGTCACAAGCTGCCTGTTCTATGTATGGATATCTCATCAGATGGAAAAGTGACCGTGACTGTCTCTGCAGATAAAAATGCCTGTTCTATGATGACAGGTGTTACAAAATCGTTAATGTCAGTTATATTTATTTTGTGGTTGAGATTTCACTTCAAAGTTTCTGATGCAATTTATATGACAGTGAAATTTGTTCCCAAGACACAGTACGTGTTTAGTGTTGGGAAAGACCGTATGGAAGAAAAGGAGAAACGGTTAGGCGAGATGTTTGAGGCTGATATAGACAATGCATTTGAAAACAAGTACGTGCCCAAGGAAGAAATTCCAGAGGAGGGAGCTGTGGCTGTTGCTGGGAGGAAAACCTAG 2295 0.4471 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTGNSFLEMYQEVHIVLCANCRSALGLSLTETSAFVLNLGTGKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEELTKPRHRFMVQSFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDSDSKMFTLQLYFKPKPPEANKPQPPSIANDTAAPGVPPRPALPPPPPPQGLPPGAAVGNPPRAPPPPMPGSLPPPPPPMSNGPTPAPPGGMPPQPPVSGSAASFNMGSRPTSMPPPQNYLAQQMQGQGVTDVVFVNSGKKLVSSSKDKFLRVWDLDTQHCMQIVGGHQGEIWSIDVDPNERYLVTGSADKELRFYALKHDSVNDQSRNGDNAVGNGDSSIQNKWEVLGYFGEIQLQNRDRVATVQFNKSGNLLACQVAGKTVEMYRVTEIEDRQNENAAGENAVTTEQPNEAFNPTVTIPDVFKLLHTVRASRKICSISFCPITPKNSLATLAVSLNNNLLEFYSIDNEVKGTVQTLEARKQLSVSNVRTLKMNQDVLVVATSPDAKYIAVAILDNSIQIYFLDRLNFFNSLYGHKLPVLCMDISSDGKVTVTVSADKNACSMMTGVTKSLMSVIFILWLRFHFKVSDAIYMTVKFVPKTQYVFSVGKDRMEEKEKRLGEMFEADIDNAFENKYVPKEEIPEEGAVAVAGRKT 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1162 764 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 149 237 IPR031781 -
Lele05g1162 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 436 IPR001680 GO:0005515
Lele05g1162 764 Gene3D - 532 722 IPR015943 GO:0005515
Lele05g1162 764 MobiDBLite consensus disorder prediction 329 345 - -
Lele05g1162 764 MobiDBLite consensus disorder prediction 245 345 - -
Lele05g1162 764 Pfam WD domain, G-beta repeat 390 426 IPR001680 GO:0005515
Lele05g1162 764 Pfam WD domain, G-beta repeat 357 385 IPR001680 GO:0005515
Lele05g1162 764 Gene3D - 142 251 - -
Lele05g1162 764 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Lele05g1162 764 SMART CactinC_cactus_3 135 250 - -
Lele05g1162 764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 429 - -
Lele05g1162 764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 388 - -
Lele05g1162 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 394 IPR001680 GO:0005515
Lele05g1162 764 SMART WD40_4 636 675 IPR001680 GO:0005515
Lele05g1162 764 SMART WD40_4 595 633 IPR001680 GO:0005515
Lele05g1162 764 SMART WD40_4 388 427 IPR001680 GO:0005515
Lele05g1162 764 SMART WD40_4 347 385 IPR001680 GO:0005515
Lele05g1162 764 ProSitePatterns Trp-Asp (WD) repeats signature. 372 386 IPR019775 -
Lele05g1162 764 MobiDBLite consensus disorder prediction 1 21 - -
Lele05g1162 764 Gene3D - 351 517 IPR015943 GO:0005515
Lele05g1162 764 SUPERFAMILY WD40 repeat-like 358 720 IPR036322 GO:0005515
Lele05g1162 764 Pfam Zinc-finger of C2H2 type 52 76 - -
Lele05g1162 764 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Lele05g1162 764 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Lele05g1162 764 PANTHER SPLICING FACTOR 3A SUBUNIT 2 147 359 - -
Lele05g1162 764 MobiDBLite consensus disorder prediction 267 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1162 Lele-ChrLele05 7274337 7282121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1162 1 260 C2H2 Transcription Factor Family AT2G32600 72.932 1.78e-118 356