Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1138 ATGGCGGAATCGGTTTCTTCTGGTGAATCCTCAAACAACACTCCGCCGCCGGTTGCGGCACCGGCTCCTGATCACAAAAGTTGGGCTGACGAGGCGGAAGAAGTTCCTCAAGAAACGAGTGCAGACACTGCGAGTTCGTCGACAGTCTCGTTGCTTAACGTTGATGAATTAACAATCGACGAGAAAAAGAGGAGTCCTAAGGTTCTGGACGAACCCGATGATTCCAATATCCAAGCGGTTACATCGGGCGATACTCCGTATACTTCAGCGAGTACTTTTGAAGATTTAAATCTAACCCCCGAGTTGCTAAAGGGATTGTATGTTGAAATGAAATTCCAGAAGCCTAGCAAGATTCAAACTATAAGTTTGCCTATGATTTTGAACCCTCCTCACAAGGATTTGATCGCTCAGGCACATAATGGATCTGGCAAGACAACTTGTTTTGTGCTTGGGATGCTGAGTCGTGTTGATCCTACGGTGCAAGCCCCTCAGGCCCTTTGCATTTGTCCAACAAGAGAATTGGCTATTCAGAATATGGAAGTTCTTCGAAAGATGGGGAGGTACACTGGGATTAGTTCTGAATGTGCCATTTCCATGGACAGCAGAGATTATATTCCAATATCAAAACGACAACCCGTGATGGCGCAAGTAGTGATTGGGACCCCTGGCACGATTAAGAAATGGATGTCAAATAAGAAGCTGGGTGTGAGCAGATTAAGAATTTTAGTTTTTGACGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAAGATGATTCCTTGAGGATAATGAAGGAAATAGAAAAAGTCAATCTGCATTGTCAGGTTCTTCTTTTTTCGGCTACCTTTAATGACACTGTCAAGAATTTTGTTTCAAGGGTAGTTAAGAAGGATCATAATCAACTTTTTGTGAAGAAAGAAGAGCTGTCTTTACAGGCAGTGAAGCAATACAAGGTGAACTGTCCTGATGAGCTCTCTAAGATTAATGTGATCAGAGATTACATATTTGAGATAGGAGAGAATGTTGGGCAAACTATTGTATTTGTGCGCACAAGAAACAGTGCAAGTATGTTGCATAAATCACTTGCTGATTTGGGTTATGAGGTTACTTCCATACAAGGTGCTCTCGACAATGTTGAGAGAGACAAGATTGTTAAGGAGTTCAGGGATGGTTTGACTCAAGTTCTTATATCTACTGATGTTCTAGCGCGAGGTTTTGATCAGCAACAGGTGAATTTGGTTATCAATTACGATCTACCTGTGAAACATACTGCTCAGTATACCCGTGAGCCAGAGCCTGATTATGAGGTATATTTGCACAGGGTTGGTAGGGCTGGACGTTTTGGGCGCAAGGGTGCTGTATTTAACTTGATATGTGATGAAAGGGATGAAAACATGATGGAAAAAATTGAGAAACATTTTGGCACCCGTGTAACTGAGGTCCAACAAAGAAATGTTGATGATTATAAACGCGCTCTTAAGGAGGCTGGTTTACTGCAATAA 1503 0.4238 MAESVSSGESSNNTPPPVAAPAPDHKSWADEAEEVPQETSADTASSSTVSLLNVDELTIDEKKRSPKVLDEPDDSNIQAVTSGDTPYTSASTFEDLNLTPELLKGLYVEMKFQKPSKIQTISLPMILNPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPTVQAPQALCICPTRELAIQNMEVLRKMGRYTGISSECAISMDSRDYIPISKRQPVMAQVVIGTPGTIKKWMSNKKLGVSRLRILVFDEADQMLAEDGFKDDSLRIMKEIEKVNLHCQVLLFSATFNDTVKNFVSRVVKKDHNQLFVKKEELSLQAVKQYKVNCPDELSKINVIRDYIFEIGENVGQTIVFVRTRNSASMLHKSLADLGYEVTSIQGALDNVERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAQYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLICDERDENMMEKIEKHFGTRVTEVQQRNVDDYKRALKEAGLLQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1138 500 Gene3D - 308 497 IPR027417 -
Lele05g1138 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 301 IPR014001 -
Lele05g1138 500 CDD DEADc_DDX19_DDX25 98 297 - -
Lele05g1138 500 CDD SF2_C_DEAD 314 458 - -
Lele05g1138 500 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 61 468 - -
Lele05g1138 500 MobiDBLite consensus disorder prediction 75 91 - -
Lele05g1138 500 Gene3D - 70 307 IPR027417 -
Lele05g1138 500 MobiDBLite consensus disorder prediction 1 91 - -
Lele05g1138 500 Pfam DEAD/DEAH box helicase 117 289 IPR011545 GO:0003676|GO:0005524
Lele05g1138 500 MobiDBLite consensus disorder prediction 1 15 - -
Lele05g1138 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 497 IPR001650 -
Lele05g1138 500 SMART helicmild6 356 449 IPR001650 -
Lele05g1138 500 SMART ultradead3 111 317 IPR014001 -
Lele05g1138 500 MobiDBLite consensus disorder prediction 56 71 - -
Lele05g1138 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 466 IPR027417 -
Lele05g1138 500 Pfam Helicase conserved C-terminal domain 327 449 IPR001650 -
Lele05g1138 500 MobiDBLite consensus disorder prediction 38 54 - -
Lele05g1138 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 120 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1138 Lele-ChrLele05 7108359 7113201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1138 84 481 Eukaryotic Initiation Factors Gene Family AT1G72730 35.697 1.33e-69 226