Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1136 ATGTCTACGCCGCCTCGTCTCTTAGCAATTAGTGCTATTGAAGTGAAGAATCATTCTATACTGAATGGAAAAGCGATAAGGATCATGTGGTCAAATCGTGATCCTGATGCAACTAAAAGTGGCATAGGGAATGTGTTTGTTAAGAACCTACCTGAAACAATAGATAATGTGGGATTACAAGATTTGTTTAAAAAGTTTGGTATTATTTTGTCCTGCAAAGTTGTCACGTCTGACGATGGAAAAAGCAAAGGATATGGCTATGTTCAATTTCAGTCAGAGGAATCTGCAAATTCTGCCATCGAGAAGCTCAATGGCTCTACTGTTAACGACAAGCAAATCTATGTTGTAAAGTTTGTCAAAAAAAGTGAACGCATTTTGCCAAATCCTGACGCGAAATATACAAATCTGTATTTCAAGAATTTGGACCCCAAAATTACTGAAGAGCTTCTACAGGAAAAGTTCTCGTCTTTTGGGAAAATTGTTAGCTTAGTTATTGCGAAGGATGACAATGGGATTTCAAAGGGTTTTGGCTTCGTGAACTATGATAACCCAGATGATGCCAGACGGGCAATGGAAGGAATGAATGGATCACAACTTGATTCAAAGATTCTATACGTAGCCAGAGCACAAAAGAAGGCCGAACGTGAGCTTATTTTGCACCATCAGTTTGAGGAGAAACGCAAGGAACAAATCTTAAAATGCAAGGTATCAAATGTTTATGTGAAGAACATTGATGATGACGTAAGTGATGAAGAACTACGGAATCTTTTTCGTGCATGTGGCTCAATAACATCTGCAGTAGTTATGCGAGATGGCAAAGGTATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCACCCCTGAGGAGGCTAATAAAGCTGTGAACACCTTTCAGGGATATATGTTTCATCGCAAACCATTACATGTTGCTATTGCTCAAAGGAAGGAGGATAGGCAAGCAAAATTGCAGATTCAAAATGCACAGCGAATGGCAGGACTCTCTGGACCTTCAATAGCCGTTATTCCTGGCGGATATTCTCCTTGTTATTATGCAGCTACCGGGGCCGTTTCACAGGTTCCTTCTCGACCTGGGCTATTGTATCAACCTTTGGGGTTGACACAAGGATGGAGGGCTAACAGCTTTGCACCTCCTACCAGACCATTTCAACAGCCACTAGTTCCTATGGTTTCCAATTTTACAAGGCAAAATAGGCAAAACAGGGGCAGGATGAATGGGCAAACAATTTCACAAGGAAATCTTCACTCAGCTCCACATGTGCCCCAATTGCGTCAGCCTTTTCAGCCAGTGAACTCTTCAAAAGAATTAAGTACACAACAGCGAGCTGGGCCAACAAAGTACGTGCCCAGTGGGCGCCAGCCTGAAATGGAGAAAGTATCTGGAGTCTCCTCTGGTGGTAGCTCTTCTGTAGGATCTTCGGGATCAGAAATGCTGCATAGCATGCTTGCCGCTGCTACTCTAGAGCAGCAGAAACAGATCATTGGCGAGCATCTGTATCCTTTAATCCATAAACTCAAGGTCAAACCGCTGCACTACTATTCTTGTAGTTTTGATTTTTGGCCTGGCCTAGCAGCGAAGATTACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGTTGCTTCTCCTGGAGTCTCCAGAGTCTCTTACTGCCAAGGTGGAAGAAGCCGTGAAGGTGCTCAAAAACTCTAAGACCCAAGTTTCTGGCCAGGATGTACTTCATCCTAATTTCCTTTCAGCTGAAGTTGCGGTGAACTGA 1776 0.4302 MSTPPRLLAISAIEVKNHSILNGKAIRIMWSNRDPDATKSGIGNVFVKNLPETIDNVGLQDLFKKFGIILSCKVVTSDDGKSKGYGYVQFQSEESANSAIEKLNGSTVNDKQIYVVKFVKKSERILPNPDAKYTNLYFKNLDPKITEELLQEKFSSFGKIVSLVIAKDDNGISKGFGFVNYDNPDDARRAMEGMNGSQLDSKILYVARAQKKAERELILHHQFEEKRKEQILKCKVSNVYVKNIDDDVSDEELRNLFRACGSITSAVVMRDGKGISKGFGFVCFSTPEEANKAVNTFQGYMFHRKPLHVAIAQRKEDRQAKLQIQNAQRMAGLSGPSIAVIPGGYSPCYYAATGAVSQVPSRPGLLYQPLGLTQGWRANSFAPPTRPFQQPLVPMVSNFTRQNRQNRGRMNGQTISQGNLHSAPHVPQLRQPFQPVNSSKELSTQQRAGPTKYVPSGRQPEMEKVSGVSSGGSSSVGSSGSEMLHSMLAAATLEQQKQIIGEHLYPLIHKLKVKPLHYYSCSFDFWPGLAAKITGMLLEMDNGELLLLLESPESLTAKVEEAVKVLKNSKTQVSGQDVLHPNFLSAEVAVN 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1136 591 PANTHER RNA BINDING PROTEIN 233 454 - -
Lele05g1136 591 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 314 IPR000504 GO:0003723
Lele05g1136 591 SMART poly_2 492 569 IPR002004 GO:0003723
Lele05g1136 591 CDD RRM2_I_PABPs 41 115 IPR045305 -
Lele05g1136 591 SUPERFAMILY PABC (PABP) domain 484 577 IPR036053 GO:0003723
Lele05g1136 591 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 10 567 IPR006515 GO:0003723
Lele05g1136 591 MobiDBLite consensus disorder prediction 431 452 - -
Lele05g1136 591 MobiDBLite consensus disorder prediction 404 480 - -
Lele05g1136 591 Gene3D - 478 581 - -
Lele05g1136 591 Gene3D - 219 328 IPR012677 -
Lele05g1136 591 SUPERFAMILY RNA-binding domain, RBD 126 215 IPR035979 GO:0003676
Lele05g1136 591 FunFam Polyadenylate-binding protein 220 328 - -
Lele05g1136 591 Gene3D - 12 115 IPR012677 -
Lele05g1136 591 SMART rrm2_1 135 207 IPR003954 GO:0003676
Lele05g1136 591 SMART rrm2_1 238 310 IPR003954 GO:0003676
Lele05g1136 591 SMART rrm2_1 44 116 IPR003954 GO:0003676
Lele05g1136 591 Gene3D - 39 93 IPR012677 -
Lele05g1136 591 SUPERFAMILY RNA-binding domain, RBD 29 124 IPR035979 GO:0003676
Lele05g1136 591 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 211 IPR000504 GO:0003723
Lele05g1136 591 SMART rrm1_1 44 116 IPR000504 GO:0003723
Lele05g1136 591 SMART rrm1_1 135 207 IPR000504 GO:0003723
Lele05g1136 591 SMART rrm1_1 238 310 IPR000504 GO:0003723
Lele05g1136 591 MobiDBLite consensus disorder prediction 404 424 - -
Lele05g1136 591 FunFam Polyadenylate-binding protein 125 219 - -
Lele05g1136 591 CDD RRM4_I_PABPs 237 314 - -
Lele05g1136 591 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 115 IPR000504 GO:0003723
Lele05g1136 591 MobiDBLite consensus disorder prediction 466 480 - -
Lele05g1136 591 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 203 IPR000504 GO:0003723
Lele05g1136 591 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 113 IPR000504 GO:0003723
Lele05g1136 591 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 308 IPR000504 GO:0003723
Lele05g1136 591 Pfam Poly-adenylate binding protein, unique domain 487 566 IPR002004 GO:0003723
Lele05g1136 591 Gene3D - 118 217 IPR012677 -
Lele05g1136 591 SUPERFAMILY RNA-binding domain, RBD 236 332 IPR035979 GO:0003676
Lele05g1136 591 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 480 571 IPR002004 GO:0003723
Lele05g1136 591 FunFam Polyadenylate-binding protein 37 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1136 Lele-ChrLele05 7091145 7094812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1136 12 589 Eukaryotic Initiation Factors Gene Family AT2G36660 49.313 9.79e-180 520
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1136 05 7091145 7094812 Lele13g1713 13 25655055 25659144 CCT
Lele05g1136 05 7091145 7094812 Lele14g1656 14 24060404 24061157 CCT
Lele05g1136 05 7091145 7094812 Lele15g0703 15 4046444 4063908 CCT
Lele05g1136 05 7091145 7094812 Lele16g0706 16 3978064 3982239 CCT
Lele13g1702 13 25604335 25607278 Lele05g1136 05 7091145 7094812 CCT
Lele14g1644 14 24003211 24006751 Lele05g1136 05 7091145 7094812 CCT
Lele15g0711 15 4101334 4111153 Lele05g1136 05 7091145 7094812 CCT
Lele16g0717 16 4043677 4046406 Lele05g1136 05 7091145 7094812 CCT
Lele05g1136 05 7091145 7094812 Lele05g1136 05 7091145 7094812 ECH
Lele05g1136 05 7091145 7094812 Lele07g1179 07 7117232 7121712 hybridization
Lele05g1136 05 7091145 7094812 Lele08g0986 08 6256681 6261159 hybridization