Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1128 ATGCCTCCGCAAAGGTACCAGAATTTGTCCAAGAAGGGTATATTTGCGCTGCTGTCTCGACCAATACCATTTGATGATGGCAATAAGGTGGGTGTTCTTCAGGGTATGGCGGCTTTGTGCGGTTCTCGGAATGCATTTGTTTGGGAATTTGGGGTTTTACAGGAAGCATGGCTGGACAGGGTCACGGGAAGGGTTTGCATGTCCATATCTGCAAAAGCCATGGGGATTACTGGAATTGATGACAGGAGATACTGGAATTGGATTTCTACCAATGAATCCAGGTTAGAACACCGGATTTTGAGGTTCCATACTGTGGCTTATTTGCAACAAATTTGGTGGTTTGAAGTTGATGGAGAGGTGAAATTTCCTTTTGCTGCTGATACTTACGCACTCTTCTTTAGGGTCCACCTTGGACGATTTTACAAAAGGCTTGGGCGGCGCGTGTGCAATTATGCACACACGCATGGTTGGGATGTAAAACCAGTAAGATTTGAGTTTTCAACCTCAGATGATCAGCAGGCATCATTTGAGTGCTGTTTGGATGAAACTGATCGTGATGATGCATATAGTAACCATAAGCGTGGAAACTGGGTTGATTACAAGGACCATCCTGATGTCAGTGACTGGTCCATTTCAACCAAGTCCAAATGGCCCCCTATAAATTTTGGGGTTGGAACAGAAGCAAGAGATAGGGAAGTGGAGCCAAATATGGATTGGGATTGGAACATAAAACCTTCTGTTCCTCAAGCCGAGTCTTCCTTTGGCTTCCTCTATAACTTTAACTGCAGTTCATATCCAGGAATGGAAGTAAAACATACAGCGATGACGGAGAGTGAGAGACAAGGGTTGGCTCCGGGAATGGACAGAGAACAGAAGACGACGACGAAGAAGAAGAAGAAGAGATTAACAAGCAAGCAGGTTGAGTTACTGGAGAAGAGTTTCGAGAAGGAGAAAAAATTGGACGCAGAGAGGAAGATGAAGCTTTCGAAGGAGGTAGGGTTGCAGCCTCGCCAAGTTGCGGTTTGGTTCCAAAATAGGAGAGCTAGGTGGAAGGCAAAGCAGCTTGAGAACTTGTATGATGCTCTCAAGCAGGAGTTTGATGTCATCTACAAGGAAAAACAGAAGCTTCAAGAAGAGGTTATGATATTAAAAGCCATGCTGAGAAAGCAAGAATCTAGTGCGCAGGTATCATCTGCAGATTATCTGCAACTCTGGGGATGA 1221 0.4488 MPPQRYQNLSKKGIFALLSRPIPFDDGNKVGVLQGMAALCGSRNAFVWEFGVLQEAWLDRVTGRVCMSISAKAMGITGIDDRRYWNWISTNESRLEHRILRFHTVAYLQQIWWFEVDGEVKFPFAADTYALFFRVHLGRFYKRLGRRVCNYAHTHGWDVKPVRFEFSTSDDQQASFECCLDETDRDDAYSNHKRGNWVDYKDHPDVSDWSISTKSKWPPINFGVGTEARDREVEPNMDWDWNIKPSVPQAESSFGFLYNFNCSSYPGMEVKHTAMTESERQGLAPGMDREQKTTTKKKKKRLTSKQVELLEKSFEKEKKLDAERKMKLSKEVGLQPRQVAVWFQNRRARWKAKQLENLYDALKQEFDVIYKEKQKLQEEVMILKAMLRKQESSAQVSSADYLQLWG 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1128 406 Pfam Phloem protein 2 65 200 IPR025886 -
Lele05g1128 406 SUPERFAMILY Homeodomain-like 286 355 IPR009057 -
Lele05g1128 406 MobiDBLite consensus disorder prediction 278 297 - -
Lele05g1128 406 ProSitePatterns 'Homeobox' domain signature. 328 351 IPR017970 GO:0000981|GO:0006355
Lele05g1128 406 PANTHER F-BOX PROTEIN PP2-A15 5 201 - -
Lele05g1128 406 Pfam Homeodomain 296 351 IPR001356 GO:0003677
Lele05g1128 406 ProSiteProfiles 'Homeobox' domain profile. 293 353 IPR001356 GO:0003677
Lele05g1128 406 CDD homeodomain 301 354 IPR001356 GO:0003677
Lele05g1128 406 Gene3D - 261 354 - -
Lele05g1128 406 Pfam Homeobox associated leucine zipper 353 387 IPR003106 GO:0006355|GO:0043565
Lele05g1128 406 SMART HOX_1 295 357 IPR001356 GO:0003677
Lele05g1128 406 Coils Coil 345 393 - -
Lele05g1128 406 FunFam homeobox-leucine zipper protein ATHB-6-like 301 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1128 Lele-ChrLele05 7040708 7045832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1128 243 383 Homeobox Transcription Factor Family AT5G03790 48.980 1.23e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele05g1128 PP2 3.6e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1692 13 25537003 25557917 Lele05g1128 05 7040708 7045832 CCT
Lele14g1635 14 23940081 23943629 Lele05g1128 05 7040708 7045832 CCT
Lele15g0721 15 4164510 4168409 Lele05g1128 05 7040708 7045832 CCT
Lele16g0728 16 4104326 4108268 Lele05g1128 05 7040708 7045832 CCT
Lele05g1128 05 7040708 7045832 Lele05g1128 05 7040708 7045832 ECH