Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1111 ATGGTATATAGTCAGTACTTGATATGCTTTCATATATCAACAGATCTTTTCATCTTGTTCCTTCTGAAAGACATGTTTGTTGGTGTCGAGGTGAAAAATGGAGAATCCCTCAAGGTTACCCCAGGAGAAGACATGATCTTGCATGTTACACAGGCATGTCTGGGAATCAAGCAAGGAAAGGAGAATGAACCAGTCCGCCTTTTTGTGAAATTTGGTGATCAAAAGCTTGTTGTCAAGGAGGAAAATGTAGAATCTCTCGAGGTTACCCCAGGAGAGGACATGATCTTGCATCTTACACAGGCAAGTCAAAGAAAGGAGAATGAATCGGTCTTTCTCTTTGTGAAATGTGGTGATCAAAAGCTTGGGATTGGAATTCTTTCACCTGAAAAGTTCCCTCAAATATCTCTTAATTTGGAAGTGACTGATAGTTCTGATTATGAAGATGATGCTAGTCCAGTTAATGCTGACAATGGGGAACCTGAATATAAAATGAAGAATGTTGTGCTTGCACTAGAAGCTAACCGGACGAGAAAGATGAGGGGTGCAAGAAAGAATGACCAAGTTGAAGATGAGGAAGATTCATCCGAATCTGATGAGTCCAGTGAGGATTCTGGTAAAGATGAGCCCCCTGAGGATGGTGGTGAGACTGGAAGTAGTGAAGATGAAGATGATAGTGATGAGGAAGACAATGAAGAAAGTGAGGATGAAGAGACGCCCAAGAAGAGGCCTGCCGAATCTTCTAAGAAAACACCTGTTCCTGGGAAGAAGGCAAAATCAGTTACTCCTCATAAGACTGGTAACTATATTAGCGCTTTACATCTTAACTCATTATTGCAGGAGAATTATTTTGCTCGGGTATGTGCTGATGGCAAAAAGTGGGGCTATGTCCGCATTGCGACTCCTTACCCCTCTAAGCAGGCTGGGAAGGCAGCTCCGATCAGCGCAGCGCGGGTGAAGCAGCAGACTCACAAATCGACTGGAGAGTATAGCTGCAGGCCTTGTAACAGGGCATTTAAAACAGAAGATGGATTGCAATCTCATACTAGGGCCAAGCACAGTGCCTAA 1065 0.4347 MVYSQYLICFHISTDLFILFLLKDMFVGVEVKNGESLKVTPGEDMILHVTQACLGIKQGKENEPVRLFVKFGDQKLVVKEENVESLEVTPGEDMILHLTQASQRKENESVFLFVKCGDQKLGIGILSPEKFPQISLNLEVTDSSDYEDDASPVNADNGEPEYKMKNVVLALEANRTRKMRGARKNDQVEDEEDSSESDESSEDSGKDEPPEDGGETGSSEDEDDSDEEDNEESEDEETPKKRPAESSKKTPVPGKKAKSVTPHKTGNYISALHLNSLLQENYFARVCADGKKWGYVRIATPYPSKQAGKAAPISAARVKQQTHKSTGEYSCRPCNRAFKTEDGLQSHTRAKHSA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1111 354 ProSitePatterns Zinc finger C2H2 type domain signature. 331 352 IPR013087 -
Lele05g1111 354 MobiDBLite consensus disorder prediction 142 161 - -
Lele05g1111 354 MobiDBLite consensus disorder prediction 235 252 - -
Lele05g1111 354 MobiDBLite consensus disorder prediction 191 234 - -
Lele05g1111 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 329 354 IPR013087 -
Lele05g1111 354 MobiDBLite consensus disorder prediction 178 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1111 Lele-ChrLele05 6948285 6952023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1111 26 112 C2H2 Transcription Factor Family AT5G03740 34.483 1.26e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g1111 NPL 6.6e-06 CL0055