Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1105 ATGGATATGGATAGCTCGCGTAGACCGTTTGATAGATCGAGAGAGCCGGGTATCAAGAAACCCCGGCTGGCTGACGAGCTCGAGCGTGGCTCAAATTCCAGTCTCCGACCTTTTCCTCAGCGACAAGTGGCTTCTGGAGTTAATTCATTGGCCCCGGCAAGGTTTAGGACAAATGACAGAGATTCCGAAGGCAGTGACCCTGGTCGCGGAGGATACCAGCCCCAACCGCTCCACCAAGAACTTGTTCATCAGTACAAAACCGCACTTGCTGAGCTGACATTCAATTCTAAACCGATAATTACCAACTTGACCATAATTGCAGGCGAGAATCTTTATGCCGCGAAGGCAATTGCTGCCACTGTTTCTGCTAACATTCTAGAGGTTCCCACCGAACAAAAGCTGCCATCTCTTTATCTTTTAGACAGTATTGTTAAGAATATTGGGCGGGACTATATAAAATACTTTGCTGCTAGACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGGTTCTTCTGTCCATTCAAGTATGAGGCACCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCCCAGACCCTCCAGATGATTGAGAAGGAACTTGGCTTCACTCCTGCTGTGAATGGTTCATCTTCTGCATCTGTACCGAGGAGTGATTCACAATCACAACGACCACAGCATAGTATCCATGTGAATCCTAAATATTTGGAGAGGCAGCGTCTTCAGCAGTCTGGCAGGATTAAAGGAACAGGTAATGATGTTGCTGGAACCACTACAAACTCTAGTGATGGCTCAGAAAGGCCAGATAGAGCATTAGGTGCTACACGAACATGGGTGGATTCAAGTGCTAACGTGCATAACATTCAGGGCTCTAATAGAGATTCATATTATGATTCTGTTCCTGAAAAGGGCATTGGGACATCCTATGGAGGCAATGAATATGGTTCTGATCTTTCAAGGAATTCAGGTTTGGTTATTGGAAGAGCTGGTGGCAGGACCTCTGAGTTGGCCCGGGATAAAGCTTGGCACAAATCAGGCAGCAATGCTGCAGACATGATGATGTCTGTTGAAAGGAATGGTTTCAGACTCAAGCGTAGCTTACCAAATCATGAAGCACCAAAGTCCATCAACTTGGATGAACATAATCAGCCAACACAAAGCTTAACTAGCATGAAGAGTAGTGTCTTATCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATGTGGGATGGGGTGAATGCTGGACTGACTGAGCATGGTGCACCCAGTGCCTCTAACAACTTGAACAAAGATTGTTGGACTTCTGATGATGACCATTTGGCAGTTGAAGGTTGCCTTCAAAGCACGTTCCATGAAGATAGAGTTGTATCCACTGAAATGAAACGCCTACCTGCTTTTGGTCATCGGCCATTATTATCTTGGAAATCACAGCAGCAGCAGCAGCAGTCCTTTGATGAGCTGAATCATAGGTCATGTCCTTCAGAAGGCATTGGATCCACTCTTGGCAGGTTGCCAAACGTTGTGAATTCTTCTAATGTCAAAATGGGAAACAGGCCTTTCTTGTCAAATGCAAAATTAGGATCGGTAGGAACAGTGCAACAACAGCAATTTCATTCTGTGGGAGCAGATTCTCCTTCTTGGCAGTCGCCTTTACGACAACAGTCTCCATCACCTCCAGTTAATGCGCACCATCCTCATCAAATGCGGATTTTGGCTGAGCAAGCCCATCCACAGACTCTTAAAATGTCTCAATTTCCGGAACGTCTACAGAGCCAAGATATTCAAGATTCATCATCTGTCATTCCACATACTGTTCAGGTTGGTAACTCACAGAGATCACATCAAAAGGACTTCCAAGGTCCATTGTCTTCAGTGTCTACTTTTCAGCCAAGACACCATAATGCAGCTGCACAGCCGCAGCATCTTAGTACTGGTACTGAAGTGTCTGAGATGAAGGAAAAGATGACCCACTCTAAAGAAACATCAGAGCAGTCAACTACAAGTTCTGTGTTAGCTGCAGTTATGCAGAGTGGGATTTTTACCAGCGGTCAGCCTGGTACAAGTTTCTTGGATAGAAGGAACCTGCCATCAAAATCAGGGGTTCAGCCTACCCGACCAAGTGGATCATCTCCTACAACATCAGTTTCTTCAGAGTCTGGGGTTGCATCTCCATCTCGATTAGGTCCTTCTAATGATGACTCGTCTACTCTGCCAAAAGAATCTCAAGGGAAGGTTGGAGCCCCATCAAGGCGACATGCTCCACCACCAGCGTCCTCTACTGTGAGTAGTGCCTCAGCCAAGACGTCAAATGCCACCAATAATAAATCTAATCAAGTTTCAAAACTTCTAAACTCATTAGTTGCAAAGGGTTTGATTTCTGCAAAAATAGATCCATCTACTGATGTGCCAGCTGAGGTGCTGACTCGATTGGAAGATCAGAGCCAAAGCATCACCACCAGTAGTACTTTGGCGTCTGTTTCAGTTACTGATTTGGCAACTGTTCCTGTTTTACCTACCGGAGATGATCAGCCTGCAAAAGGTTCCTCCAGTCAATCAACCCCCTCAGAAATAAGAAGTCTAATTGGCTTTGAGTTTAAGCCCAGTGTGATCCGGGAATTGCATTTACCCGTGATCAGAGAACTATTTGATAATTTCCCTCATCATTGCAGCATTTGTGGCCTTAGGCTTAAAAATCAAGAACAATTTAATAGACACTTGGAGTGGCATGCTATGAGAGAAAGAGAACAAAATGATATATTGAAGGCCTCAAGGAGATGGTATTTAAGGTCAAGTGACTGGGCTGTTGGCAAGGATGAAGTTTCATCTGAGTATGAGGGTATTGATTCCATGGATTTACATGGCAATAAATCAGACAGAAGTGAAGAGGATGCTAAGGTTCCATCTGATGAAGATCAGTGCTTATGTATGCTGTGTGGTGAGCTGTTTGAAGATGTTTACTGTCAAGAAAGGGATGAGTGGATGTTCAAAGGGGCGGTTTACCTACCTGTCTCCAGTAGCGATAGTGAGATGTATATTAACGTCAGTAGCATAGGGGGGCCCATTGTTCACATTTGGTGCTTATCAGAGAGTTCCATATCTAGCGCCCCTACGAAGGAACAGGAACAGGAATAG 3135 0.4491 MDMDSSRRPFDRSREPGIKKPRLADELERGSNSSLRPFPQRQVASGVNSLAPARFRTNDRDSEGSDPGRGGYQPQPLHQELVHQYKTALAELTFNSKPIITNLTIIAGENLYAAKAIAATVSANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVGSSVHSSMRHLFGTWKGVFPPQTLQMIEKELGFTPAVNGSSSASVPRSDSQSQRPQHSIHVNPKYLERQRLQQSGRIKGTGNDVAGTTTNSSDGSERPDRALGATRTWVDSSANVHNIQGSNRDSYYDSVPEKGIGTSYGGNEYGSDLSRNSGLVIGRAGGRTSELARDKAWHKSGSNAADMMMSVERNGFRLKRSLPNHEAPKSINLDEHNQPTQSLTSMKSSVLSSSWKNSEEEEYMWDGVNAGLTEHGAPSASNNLNKDCWTSDDDHLAVEGCLQSTFHEDRVVSTEMKRLPAFGHRPLLSWKSQQQQQQSFDELNHRSCPSEGIGSTLGRLPNVVNSSNVKMGNRPFLSNAKLGSVGTVQQQQFHSVGADSPSWQSPLRQQSPSPPVNAHHPHQMRILAEQAHPQTLKMSQFPERLQSQDIQDSSSVIPHTVQVGNSQRSHQKDFQGPLSSVSTFQPRHHNAAAQPQHLSTGTEVSEMKEKMTHSKETSEQSTTSSVLAAVMQSGIFTSGQPGTSFLDRRNLPSKSGVQPTRPSGSSPTTSVSSESGVASPSRLGPSNDDSSTLPKESQGKVGAPSRRHAPPPASSTVSSASAKTSNATNNKSNQVSKLLNSLVAKGLISAKIDPSTDVPAEVLTRLEDQSQSITTSSTLASVSVTDLATVPVLPTGDDQPAKGSSSQSTPSEIRSLIGFEFKPSVIRELHLPVIRELFDNFPHHCSICGLRLKNQEQFNRHLEWHAMREREQNDILKASRRWYLRSSDWAVGKDEVSSEYEGIDSMDLHGNKSDRSEEDAKVPSDEDQCLCMLCGELFEDVYCQERDEWMFKGAVYLPVSSSDSEMYINVSSIGGPIVHIWCLSESSISSAPTKEQEQE 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1105 1044 MobiDBLite consensus disorder prediction 633 670 - -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 370 396 - -
Lele05g1105 1044 Pfam CID domain 86 196 IPR006569 -
Lele05g1105 1044 SMART 558neu5 80 202 IPR006569 -
Lele05g1105 1044 CDD CID_Pcf11 82 194 - -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 33 47 - -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 1 29 - -
Lele05g1105 1044 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 633 647 - -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 609 628 - -
Lele05g1105 1044 FunFam polyadenylation and cleavage factor homolog 4 74 202 - -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 207 229 - -
Lele05g1105 1044 Gene3D - 74 202 IPR008942 -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 533 566 - -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 682 778 - -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 237 266 - -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 836 855 - -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 378 396 - -
Lele05g1105 1044 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 39 1036 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lele05g1105 1044 MobiDBLite consensus disorder prediction 682 743 - -
Lele05g1105 1044 ProSitePatterns Zinc finger C2H2 type domain signature. 890 910 IPR013087 -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 947 966 - -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 1 75 - -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 533 562 - -
Lele05g1105 1044 SUPERFAMILY ENTH/VHS domain 79 206 IPR008942 -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 207 271 - -
Lele05g1105 1044 MobiDBLite consensus disorder prediction 756 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1105 Lele-ChrLele05 6885948 6893343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1105 76 417 C2H2 Transcription Factor Family AT4G04885 38.268 4.90e-53 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g1105 CID 2e-13 CL0020
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1683 13 25466331 25468553 Lele05g1105 05 6885948 6893343 CCT
Lele14g1622 14 23849259 23849636 Lele05g1105 05 6885948 6893343 CCT
Lele15g0736 15 4260664 4262545 Lele05g1105 05 6885948 6893343 CCT
Lele16g0742 16 4202395 4204115 Lele05g1105 05 6885948 6893343 CCT
Lele05g1105 05 6885948 6893343 Lele05g1105 05 6885948 6893343 ECH
Lele05g1105 05 6885948 6893343 Lele07g1146 07 6921943 6929312 hybridization
Lele05g1105 05 6885948 6893343 Lele08g0958 08 6049236 6056435 hybridization