Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1100 ATGGAAATGGAAGATCACCACAACAACCATCATCATCCCCAGCAATATGCCATGCCGGATCTCAGGCATCTCATCAATGGTGCTCCCAGGTCCACTGCCATCCATTTCCCCTCCATACCTCCCCACCCCACGCCGGAGCTCTTCCACGCTCACCGAAATCTCACGCCCGCCCACCACCAGCACTACGACATGATGATGTTTGGTCGTCATGTCGCCGATGCAATGCCCCGTGCCCTCCACGACTTTGCCTCCGATTCACCTCCCGCCGCCGCTCCACCCACTAACAATATTACTGTGGCCACTCCGGCTACCACCGCCTGCGCTTTCACTCCTCCGCTCAGTGGCTTAGAGGCCGAGACCCCAGGCTGCCTCGCCGGGGATGCCTCCACCGGAAGATGGCCCAGGCAGGAAACACTCACTCTTCTTGAGATCAGATCTCGTCTCGACCCTAAATTCAAAGAGGCCAATCAGAAGGGCCCCTTATGGGACGAAGTGTCTAGGATCATGTCAGAAGAATATGGATACCAAAGAAGTGGGAAGAAATGCAGGGAGAAATTCGAGAACTTGTACAAATATTACAAGAAGACAAAGGAAGGTAAGGCGAGGAGACAGGATGGGAAGCATTACAGGTTCTTCCGTCAACTTGAAGCTTTGTATGGAGGAAACGGCAACTCAACCTCAGTACCAGAAACCAATTATGGTAGCAGCGGAATTGGATTTCAGACACCCTCCCAAACAAATCAAGACATGTTTCAGTCTCACAACCACAAGACTTGTGATAGCCTCAGCCTCACGAACTCAACAGATTTCGGCACGTCGTCATCGGAGGACAACAATCTTTGCAGCATGGAAAATGATTCCACGGAGAAGGGGAGGAAGAGGAGTAGTGGAAGCAGATGGAAGGCAAAAATAAAAGAGTTCATTGACTCACAGATGAAGAAGTTGATTGAGAAGCAAGAGGCGTGGATGGATAGGCTCGTGAAGACGCTAGAACAGGAGGAGAAGGAGAGGGTTTTAAGAGAGGAAGAATGGAGAAGACAAGAGGCTACGAGGTTGGAAATGGAGCACAAGTTTCGGGCTAAAGAGAGAGCGTGGATTGAAGCAAGGGATGCTGCTCTAATGGACGCCTTGCAGAAACTAACGGGGAGAGAGGTAAAAGCTCAATCTCCTGTTGAGCAGGCTCTAATTATGGCTAATGAAATTCAGAATCATAGGGAAAACCAGAACGAAGAGGGAGGTGAAATTCTCGATGGTAGTCATAGAGGTGCTGACAACTGGTCAAAAAGTGAGATTACAAAGCTCTTAGAGTTGAGGGCGAAGATGGAGTCTGGGTTTCCACAAGGTGGGTGCTCGGAAGAGGTTATGTGGGAGGAAGTAGCCAACAAAATGGCTTGCTTTGGGTACGAAAGGAATGCTTTGATGTGCAAACACAAGTGGGAAAGCATAAGCAGCTATGCAAATGCTAAGGAAGGAATCAAGAAGCGCAAGGAAAAGTCTAGAAGCTGTTTTTACTTCGACAACAACATCAATGAGCAGCCATCCTTGTATAACCAACAAGGAACCACTCCGTATTGTGATATCAACGTTAATGATCAACGGCACGACAATGAGAGGCTACAAACAAATGATGGCTCTTCGCCTTCAAATTCAAATGCGGTTGCTGCTGACGTTAACTGCTTTCCCTTCTTAATTAGCACGGAAGGATCAGAAAATTTGTGGGAAAACTACGGCTTGAAGATTAATAAAGGAAATCAAAACCAGTGA 1764 0.4824 MEMEDHHNNHHHPQQYAMPDLRHLINGAPRSTAIHFPSIPPHPTPELFHAHRNLTPAHHQHYDMMMFGRHVADAMPRALHDFASDSPPAAAPPTNNITVATPATTACAFTPPLSGLEAETPGCLAGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEYGYQRSGKKCREKFENLYKYYKKTKEGKARRQDGKHYRFFRQLEALYGGNGNSTSVPETNYGSSGIGFQTPSQTNQDMFQSHNHKTCDSLSLTNSTDFGTSSSEDNNLCSMENDSTEKGRKRSSGSRWKAKIKEFIDSQMKKLIEKQEAWMDRLVKTLEQEEKERVLREEEWRRQEATRLEMEHKFRAKERAWIEARDAALMDALQKLTGREVKAQSPVEQALIMANEIQNHRENQNEEGGEILDGSHRGADNWSKSEITKLLELRAKMESGFPQGGCSEEVMWEEVANKMACFGYERNALMCKHKWESISSYANAKEGIKKRKEKSRSCFYFDNNINEQPSLYNQQGTTPYCDINVNDQRHDNERLQTNDGSSPSNSNAVAADVNCFPFLISTEGSENLWENYGLKINKGNQNQ 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1100 587 CDD GT1 132 197 - -
Lele05g1100 587 FunFam Trihelix transcription factor GT-2 426 488 - -
Lele05g1100 587 FunFam trihelix transcription factor PTL-like 133 195 - -
Lele05g1100 587 Coils Coil 316 343 - -
Lele05g1100 587 Pfam Myb/SANT-like DNA-binding domain 132 218 IPR044822 -
Lele05g1100 587 Pfam Myb/SANT-like DNA-binding domain 424 506 IPR044822 -
Lele05g1100 587 ProSiteProfiles Myb-like domain profile. 418 483 IPR001005 -
Lele05g1100 587 PANTHER FI21293P1 118 535 - -
Lele05g1100 587 SMART sant 422 485 IPR001005 -
Lele05g1100 587 SMART sant 129 192 IPR001005 -
Lele05g1100 587 Gene3D - 133 195 - -
Lele05g1100 587 Gene3D - 426 486 - -
Lele05g1100 587 ProSiteProfiles Myb-like domain profile. 125 190 IPR001005 -
Lele05g1100 587 MobiDBLite consensus disorder prediction 269 297 - -
Lele05g1100 587 CDD GT1 425 485 - -
Lele05g1100 587 Coils Coil 391 411 - -
Lele05g1100 587 MobiDBLite consensus disorder prediction 269 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1100 Lele-ChrLele05 6859519 6862203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1100 11 582 Trihelix Transcription Factor Family AT5G03680 44.928 9.80e-139 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele05g1100 Myb_DNA-bind_4 9.8e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1100 05 6859519 6862203 Lele05g1100 05 6859519 6862203 ECH
Lele05g1100 05 6859519 6862203 Lele07g1141 07 6895575 6898253 hybridization
Lele05g1100 05 6859519 6862203 Lele08g0954 08 6022503 6023780 hybridization