Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1099 ATGCGTTCCAATACTCACTCTAGTTCTACCAGCGCACCCACCGGAGCTAGCAGCAGCAGCGGTGCAGCAACTGGGCGTCACCCGGTGTACCGGGGGGTGAGGCGTCGGAGTAGCGGGAAATGGGTGTCTGAAATTCGAGAGCCCAGGAAGCCCAATAGGATATGGTTAGGGACATTCCCTACCCCTGAAATGGCTGCCATTGCCTATGACGTGGCTGCCCTTGCCCTCAAAGGCAAGGATGCCGACCTTAACTTCCCTGACTCGGCTTCTTCGCTGCCCGTTCCAGCGTCTAGCTCTGCCCGTGATATTCAGATTGCTGCAGCCAGCGCTGCTGCTGCTGCTGGGGCAGCAAGGGATGCCTTACCCGGTCCCAATGAACAAGCGAATGCTAATGTTAGTGTTTCGGAGGGACAACAATATGCGGGGGCTGAGTTTGTGGACGAGGATTTGATCTTTGATTTACCTAATGTTCTTGTCAATATGGCTGAAGGAATGATGCTAGCCCCTCCTCCTCTGGATTTTACTGGGAAAAATGATGCTGATGATGATGCTGCCGGAGGCAACGTCGGTGGTGATGATCAAAACCTTTGGAAATTTCCATAA 603 0.534 MRSNTHSSSTSAPTGASSSSGAATGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALALKGKDADLNFPDSASSLPVPASSSARDIQIAAASAAAAAGAARDALPGPNEQANANVSVSEGQQYAGAEFVDEDLIFDLPNVLVNMAEGMMLAPPPLDFTGKNDADDDAAGGNVGGDDQNLWKFP 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1099 200 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lele05g1099 200 MobiDBLite consensus disorder prediction 1 24 - -
Lele05g1099 200 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Lele05g1099 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 24 198 IPR045277 GO:0003700
Lele05g1099 200 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Lele05g1099 200 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Lele05g1099 200 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Lele05g1099 200 MobiDBLite consensus disorder prediction 173 200 - -
Lele05g1099 200 MobiDBLite consensus disorder prediction 1 43 - -
Lele05g1099 200 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lele05g1099 200 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Lele05g1099 200 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lele05g1099 200 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1099 Lele-ChrLele05 6843841 6844443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1099 15 200 AP2-EREBP Transcription Factor Family AT2G36450 61.780 4.76e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele05g1099 AP2 7e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1099 05 6843841 6844443 Lele13g1689 13 25515797 25516342 CCT
Lele05g1099 05 6843841 6844443 Lele14g1629 14 23902249 23902794 CCT
Lele05g1099 05 6843841 6844443 Lele15g0728 15 4208018 4208563 CCT
Lele05g1099 05 6843841 6844443 Lele16g0733 16 4148732 4149277 CCT
Lele05g1099 05 6843841 6844443 Lele05g1099 05 6843841 6844443 ECH
Lele05g1099 05 6843841 6844443 Lele07g1140 07 6879367 6879966 hybridization