Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1095 ATGGACTTCCATCTGAAGCAATGGAAAAACCAGCACGAGTCTGAATCGGAGGAACAGCATTTTGCAAAGATGCCGAGGCTCATGCTTGAATATCATCCACACCCACCACCACATTCGTCCCCCTCTTCCCCTGCTCTCCCTCTCTTTGTGCCTGAACTCAACTCCAAAGTCAGCTCCCTCTCCCCATTTCCTGATTCCTCATCACCCCCCGCCAGATTTCCAAGTGAGATTTCTATCCAATTTTCATCTCTTCTTTCGGATTTATCTGTGTTTTGGCGGTTTCCCGTTCAGCTCTCTTACCATGAATTTTTTCTTGGTTTTGTGTTAGGAATGGGGAGTTATTTCAGTGTGGCTCAGTGGCAGGAGCTGGAGTTGCAGTCACAGATATTCAGGTACATGTTGGCGGGTGCTGCTGTTCCCCCTGAGCTTCTTCTGCCAATTAAGAAGAGCCTTCTTCATTCTGCTCCTTACTTTCTCCATTATCAGCCTTCTCTGTTGCAATCGGGATATTGGGGAGGAGCTAACATGGATCCAGAGCCCGGCCGCTGCCGAAGGACGGACGGCAAGAAATGGCGGTGCTCGAGAGACGTGGTGGCCGGCCAGAAGTACTGTGAGCGCCACATGCATCGCGGTCGAAACCGTTCAAGAAAGCCTGTGGAAGTACCCACGCCAGCCACTGCGGGAGGCCTTGTCTCTGCCACCGCCGGCGTCGAGTGTCCCTCTTCTACAACAGCCTCTGCATCTGCCCCGCATATGACACCAGCGTTTAGATCCCCTTTCGATCTCCTTCAGCTCAAACGATGTTCATCTGGGACGATCGAGAATGAAAAGGAGAGCGTATTTGAAAACCAAGGTCGAGATCATGTGGACGGTGGAGGGAGATCAGATGGGCATATTCTGCGACATTTTTTCGATGATTGGCCACGATCACTTCAGGAACCTGACAATGCCGAAAGTAACGCTAGCTCCATCAACTCGGCCACGTGCCTCTCTATTTCAATGCCCGGAAATGCTTCGTCAGACGTGTCCCTGAAACTGTCCACGGGCGATGATGCACAGTATCCATGTCCTAGAAATGGGAATGTGGGCCAACAGCATTTGCAGTTGAATTGGGCAGGAGGATGGGCTTCTTCGGCTAATCATGTGGCTTCCATGGGAGGACCACTCGCAGAGGCCCTCAGATCATCCACCACAACGTCTTCACCCACAAGTGTCTTGCACCAGTTGCCTCGTAGTTCTGTTTCTGAAACCAGCTTCATTAGCACCTAG 1269 0.5154 MDFHLKQWKNQHESESEEQHFAKMPRLMLEYHPHPPPHSSPSSPALPLFVPELNSKVSSLSPFPDSSSPPARFPSEISIQFSSLLSDLSVFWRFPVQLSYHEFFLGFVLGMGSYFSVAQWQELELQSQIFRYMLAGAAVPPELLLPIKKSLLHSAPYFLHYQPSLLQSGYWGGANMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVEVPTPATAGGLVSATAGVECPSSTTASASAPHMTPAFRSPFDLLQLKRCSSGTIENEKESVFENQGRDHVDGGGRSDGHILRHFFDDWPRSLQEPDNAESNASSINSATCLSISMPGNASSDVSLKLSTGDDAQYPCPRNGNVGQQHLQLNWAGGWASSANHVASMGGPLAEALRSSTTTSSPTSVLHQLPRSSVSETSFIST 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1095 422 Pfam WRC 178 220 IPR014977 -
Lele05g1095 422 MobiDBLite consensus disorder prediction 393 422 - -
Lele05g1095 422 PANTHER GROWTH-REGULATING FACTOR 5 68 341 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lele05g1095 422 SMART QLQ_2 113 149 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele05g1095 422 ProSiteProfiles WRC domain profile. 177 221 IPR014977 -
Lele05g1095 422 ProSiteProfiles QLQ domain profile. 114 149 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele05g1095 422 Pfam QLQ 115 147 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1095 Lele-ChrLele05 6808068 6809993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1095 1 409 GRF Transcription Factor Family AT3G52910 45.238 1.91e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lele05g1095 WRC 2.7e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1095 05 6808068 6809993 Lele13g1686 13 25485597 25487317 CCT
Lele05g1095 05 6808068 6809993 Lele14g1624 14 23867529 23868663 CCT
Lele05g1095 05 6808068 6809993 Lele15g0733 15 4235883 4238083 CCT
Lele05g1095 05 6808068 6809993 Lele16g0738 16 4180847 4181974 CCT
Lele05g1095 05 6808068 6809993 Lele05g1095 05 6808068 6809993 ECH
Lele05g1095 05 6808068 6809993 Lele07g1136 07 6846562 6848498 hybridization
Lele05g1095 05 6808068 6809993 Lele08g0947 08 5968413 5970383 hybridization