Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1090 ATGAAGGTTATCGCTGCGTATTTGCTCGCCGTGTTGGGTGGCAACACTAGCCCTTCCGCCGATGATATCAAAAATATCCTTGGCTCTGTTGGAGCAGAAGCAGATGATGATAGAATTGAGCTTCTCTTGTCTGAATTGAAGGATAGAGACATAACGGAGGTTATTGCCAGCGGTAGGGAAAAGTTGGCCTCAGTGCCTTGTGGTGGTGGGGCTGCAGTTGCAGTGGCTGCTGCGCCTGGAGCTGGTGGTGCCGCTGCTGCTCCAGCTGCGGCTGAGTCAAAGAAAGAGGAGAAGGTGGAGGAGAAAGAGGAGTCTGACGATGATATGGGCTTCAGCCTCTTCGATTAA 348 0.5201 MKVIAAYLLAVLGGNTSPSADDIKNILGSVGAEADDDRIELLLSELKDRDITEVIASGREKLASVPCGGGAAVAVAAAPGAGGAAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1090 115 CDD Ribosomal_P2 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Lele05g1090 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Lele05g1090 115 Hamap 50S ribosomal protein L12 [rpl12]. 2 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lele05g1090 115 MobiDBLite consensus disorder prediction 85 115 - -
Lele05g1090 115 FunFam 60S acidic ribosomal protein P2 1 59 - -
Lele05g1090 115 Pfam 60s Acidic ribosomal protein 17 114 - -
Lele05g1090 115 Gene3D - 1 59 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1090 Lele-ChrLele05 6784087 6785238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1090 1 115 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 63.478 2.61e-32 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1090 05 6784087 6785238 Lele06g0955 06 5885458 5886539 ECH
Lele05g1090 05 6784087 6785238 Lele05g1090 05 6784087 6785238 ECH
Lele05g1090 05 6784087 6785238 Lele07g1131 07 6821193 6822351 hybridization
Lele05g1090 05 6784087 6785238 Lele08g0942 08 5933430 5934579 hybridization