Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1043 ATGGCAGTGATCGCAAGATTCATTGGCATCCGTTCTGCTTTGCCTCGCTCCTCACTTGTTTCTCCTGCTCTCCTCAGTAGAGGAATTGCTTACAAGCTCTTCGTTGGAGGACTGTCATTTCTCACAACGGATAAGGGATTGTCAGAAGCATTTTCTGGGTATGGTCAAGTTGTTGAAGCAAAAATTGTCATGGACAAGGTATCAGACAGATCAAAAGGGTTTGGGTTTGTCACCTTTGCCTCAGAGGATGAGGCTGATAATGCTATAACAGGGATGAATGGGAAGGCACTAAACGGTCGTGTTATCTTTGTGGATTATGCAAAACCCAAATCCAATATTGGTTATGGAATGCCAATTGCTAGAGGACCTCCTGAACCAACAGCGCACAGTTAA 393 0.4453 MAVIARFIGIRSALPRSSLVSPALLSRGIAYKLFVGGLSFLTTDKGLSEAFSGYGQVVEAKIVMDKVSDRSKGFGFVTFASEDEADNAITGMNGKALNGRVIFVDYAKPKSNIGYGMPIARGPPEPTAHS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1043 130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 102 IPR000504 GO:0003723
Lele05g1043 130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Lele05g1043 130 SMART rrm1_1 32 105 IPR000504 GO:0003723
Lele05g1043 130 SUPERFAMILY RNA-binding domain, RBD 31 122 IPR035979 GO:0003676
Lele05g1043 130 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 28 116 - -
Lele05g1043 130 Gene3D - 22 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1043 Lele-ChrLele05 6483759 6485752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1043 33 111 Eukaryotic Initiation Factors Gene Family AT2G23350 36.709 1.49e-09 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1043 05 6483759 6485752 Lele05g1043 05 6483759 6485752 ECH
Lele05g1043 05 6483759 6485752 Lele07g1078 07 6513371 6515442 hybridization
Lele05g1043 05 6483759 6485752 Lele08g0891 08 5631554 5632785 hybridization