Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1034 ATGGCCACGCCTTTAGCTACTAAGTTCGTTGGGGTCAATGATGAAGAGCTTGAGAATGTGATGAACTCGCTCGCTAATCTGAGGGGGTTGACCCTTAAGTCGGCTTTTAGATTTGTCAATTTACATCTGTTTGCGGATCGGTGCCCCTCTACCTATCCACCCGGTGATCACCGAGCAAGCAGTGTTTCGCTCTATCTCAGACTCAACATGGGAAGGGTGCGAACCAAGACCGTGAAGAAGTCTTCGCGCCAAGTGATCGAGAAGTACTACTCTCGAATGACCCTGGATTTTCACACAAACAAGAAAATCCTGGAGGAGGTGGCTCTCATTCCATCCAAGAGGCTCCGCAATAAGATTGCGGGATTCTCCACTCACCTGATGAAGAGAATCCAGAAGGGTCCCGTTCGGGGCATTTCCCTCAAGCTTCAAGAGGAGGAGCGCGAACGCAGAATGGATTTCGTGCCCGATGTTTCTGCGATTAAGACGGACCAGATTGAGGTCGATAAGGAGACTCTTGATATGCTCAGCGCTCTTGGCATGAGCGAGATTCCAGGGCTTGTTCAAGTTGATCCTGTTCCCGTTCAGCAATCATTTGGATTCGGCCGCGGTGGTTTTGGTGGAGCCGGCAGGAGGTTCTGA 639 0.5086 MATPLATKFVGVNDEELENVMNSLANLRGLTLKSAFRFVNLHLFADRCPSTYPPGDHRASSVSLYLRLNMGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMSEIPGLVQVDPVPVQQSFGFGRGGFGGAGRRF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1034 212 FunFam 40S ribosomal protein S17 70 131 - -
Lele05g1034 212 Hamap 30S ribosomal protein S17e [rps17e]. 70 132 IPR001210 GO:0003735|GO:0005840|GO:0006412
Lele05g1034 212 SUPERFAMILY Rps17e-like 70 131 IPR036401 GO:0003735|GO:0005840|GO:0006412
Lele05g1034 212 Gene3D - 70 131 IPR036401 GO:0003735|GO:0005840|GO:0006412
Lele05g1034 212 Pfam Ribosomal S17 70 189 IPR001210 GO:0003735|GO:0005840|GO:0006412
Lele05g1034 212 ProSitePatterns Ribosomal protein S17e signature. 110 125 IPR018273 GO:0003735|GO:0005840|GO:0006412
Lele05g1034 212 PANTHER 40S RIBOSOMAL PROTEIN S17 70 196 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1034 Lele-ChrLele05 6443012 6445850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1034 70 212 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 80.556 1.74e-77 227