Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1009 ATGGCGACGTACTTCCATGGTAATACAGAAATCCAAGCACCCGACGGACTCCAAACTCTTGTACTCATGAACCCAGGCTACATCCAGTACTCCGACACGCCTCCGCCGCAACCATCGCATCCCGGCAACCTTGTCTTCCTCAATTCTGCCAACAACTCGCTCCCTCCCCAAACCCTACAACACGCGCCACCCTCTCACACCCAACAATTCGTCGGCATCCCTCTCCCAGCCGCCTCCTCCCACGACCCCACGCATCCCCATCACGATGTCTCTGCTCTGCATGGATTCGTGCCCCGCATGCAGTACAACCTCTGGAGCACAGTTAACTCCAACGCGGCGGCGAGTGATACCCCACGCTCTCAACAGGGTCTGTCCCTCAGCCTTTCCTCTCAGCAGGCGGGGATGGGTTCTTTCCGGGTCGAGCGTGACGTACCATCGCAGGGTCAGGCACTAGCCATGTCAGGGGATGATGTCCATACGTCAGGTGGGTCATCGTCTTCGGCGTCTGGAGTTACTAATGGCGTTTCAGGGATTCAGAGCGTGCTCCTGGGCTCTAAGTACTTGAAGGCAGCGCAGGAACTGCTAGACGAGGTCGTGAACGTGAACGATGGCATAACGAGCGAAAAGGCAAAGAAAAGTAGCAGCCAGGCAAAGGCAATTAAATATCCTTCCACGGCGGCAAGTGGAGATGGTTCGCCTGGAGGAGAGGGAAGCGCCAAGCCCAGCTCTGAGCTCTCTACTGCAGAAAAACAAGATATTCAGATGAAGAAGGCCAAGTTAATCAACATGCTTGACGAGGTGGAGCAGAGGTACAGACAGTATCACCATCAGATGCAGATTGTGAGTTCTTCGTTTGAACAAGCAGCAGGGATTGGGTCAGCGAGAACATACACAGCACTGGCACTGCAAACGATCTCGAAGCAGTTTCGGTGTTTGAAAGATTCAATATTGGGCCAAATTCGAGCTGCCAACAAGAGCTTAGGAGAGGAAGATTGCTTTGGTACAAAAATGGAAGGTTCGAGGTTTAAATACGTGGACCATCATCTTCGCCAACAGCGAGCTCTCCAACAGTTGGGAATGATTCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTCGAGCACTTCCTCCACCCTTACCCCAAGGACTCTGACAAACACATGCTTGCAAAACAAACAGGGCTCACCAGAAGCCAGGTCTCAAATTGGTTCATAAATGCGCGAGTCCGATTGTGGAAGCCGATGGTGGAAGAAATGTACTTGGAGGAGATGAAGGAGCATGAACAGAACGGTAGGGATGAGAGATCAAGCAAGAGTAGTGAAGATCCTGCCATGAAATCTGCAGCAGCCCCACAAGAGAAATCCCCTGCCTCTGCAACTGAACCCAAGAGCTTGAATTTCAAACAAGACATTTCCACAAACCCCAACATTCCAACCGTTTCAGTCTCTACGCCATCAACATCCCCAGTTGGGGGAAATGCAAGAAACCACCCAGGGTTCAGCTTCATGGGGATTTCAGAGTTAGATGGGATCCCACAACCAAGTCCCAAGAAACCAAGGAACCATGAGATTCTGCAGTCCACAATTAACGTTGATATGAAGCCTGATGATGAAGGGAATGGTCAAATCTCCATGAAATTCGGGGATGAGAGGCAGAGCAGAGATGGGTACTCTTTCATGGGAAATCAGACGAACTTCATAGGAGGATTTGGGCAATACCCAATTGCAGAAATTGATAGGTTTGAAGCAGAGCAATTCACACCAAGGTTCGCAGGTAATAATGGGGTTTCGCTCACTCTTGGTCTTCCCCACTGTGACTCATTGTCAGCAGCAACACATCAAACATTTCTTCCAAACCAGAGCATTCAACTCGGGAGAAGGATGGAGCTGGGTGAACCCAACGAGTTTGGTGGCATAAACACTTCAACTCCTCTCTCTTCAGCTGCATTTGAGAATATCAATATGCAGAACCCCAAGAAGTTTGCTTCACAATTGTTGCCAGACTTCGTGGCTTGA 2052 0.5039 MATYFHGNTEIQAPDGLQTLVLMNPGYIQYSDTPPPQPSHPGNLVFLNSANNSLPPQTLQHAPPSHTQQFVGIPLPAASSHDPTHPHHDVSALHGFVPRMQYNLWSTVNSNAAASDTPRSQQGLSLSLSSQQAGMGSFRVERDVPSQGQALAMSGDDVHTSGGSSSSASGVTNGVSGIQSVLLGSKYLKAAQELLDEVVNVNDGITSEKAKKSSSQAKAIKYPSTAASGDGSPGGEGSAKPSSELSTAEKQDIQMKKAKLINMLDEVEQRYRQYHHQMQIVSSSFEQAAGIGSARTYTALALQTISKQFRCLKDSILGQIRAANKSLGEEDCFGTKMEGSRFKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHEQNGRDERSSKSSEDPAMKSAAAPQEKSPASATEPKSLNFKQDISTNPNIPTVSVSTPSTSPVGGNARNHPGFSFMGISELDGIPQPSPKKPRNHEILQSTINVDMKPDDEGNGQISMKFGDERQSRDGYSFMGNQTNFIGGFGQYPIAEIDRFEAEQFTPRFAGNNGVSLTLGLPHCDSLSAATHQTFLPNQSIQLGRRMELGEPNEFGGINTSTPLSSAAFENINMQNPKKFASQLLPDFVA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1009 683 Pfam Associated with HOX 181 316 IPR006563 -
Lele05g1009 683 Pfam Homeobox KN domain 383 422 IPR008422 GO:0003677|GO:0006355
Lele05g1009 683 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 105 452 - -
Lele05g1009 683 SMART HOX_1 366 430 IPR001356 GO:0003677
Lele05g1009 683 MobiDBLite consensus disorder prediction 208 251 - -
Lele05g1009 683 Coils Coil 250 277 - -
Lele05g1009 683 MobiDBLite consensus disorder prediction 437 453 - -
Lele05g1009 683 CDD homeodomain 366 427 IPR001356 GO:0003677
Lele05g1009 683 SUPERFAMILY Homeodomain-like 367 433 IPR009057 -
Lele05g1009 683 MobiDBLite consensus disorder prediction 465 503 - -
Lele05g1009 683 MobiDBLite consensus disorder prediction 152 171 - -
Lele05g1009 683 MobiDBLite consensus disorder prediction 208 222 - -
Lele05g1009 683 MobiDBLite consensus disorder prediction 437 503 - -
Lele05g1009 683 Gene3D - 369 448 - -
Lele05g1009 683 ProSiteProfiles 'Homeobox' domain profile. 363 426 IPR001356 GO:0003677
Lele05g1009 683 SMART prehox3 176 318 IPR006563 -
Lele05g1009 683 FunFam BEL1-like homeodomain protein 9 369 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1009 Lele-ChrLele05 6244060 6246502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1009 1 683 Homeobox Transcription Factor Family AT2G35940 49.264 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lele05g1009 POX 3.5e-49 No_clan