LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele05g1008	ATGGATCAAGTTGAGATTCCCGAGTATTACATTTGTCCCATATCCCTCCAAATCATGAAAGATCCCGTTACTGCTGTTACCGGCATCACTTATGATCGTGAAAGCATCGAACGCTGGCTCTACACCTCCAACAACACCACTTGCCCTGTAACCAAACAGACCCTGCCGTTAGACTCTGACTTAACCCCCAACCACACCCTTCGCCGCCTCATTCAGGCTTGGTGCACTCAGAATGCCTCCCTCGGCGTCGATCGTATTCCCACCCCCAAACCTCCCCTCGAAAAGTTTCAGGTACTCAAAATCCTCTCTCACCTTCGCTGTCCTCACTTGTATCTCAAAGCTCTCCGGCAGTTAGAACTGCTCGCCGCCCAGAACCACCGGAATAAGCGGTATTTGGTGGAAGCTGGCGTTCCCAGAGCCATGGTGCTGTTCGTTTTGGATTGTTTTCAGAAACGATGGATTCGCGAGGGGCTCGAAGAGGCTCTCAGTTTGTTGCAGTTTGTGAAGGTTCCCCAAGAGGAAATCAAGCTGCTTCTGCAGCAAAATGATCAGGTTTTGGATTCTATCACGTGGGTTTTAGCCTCTGAAATAATGGACAACTCTGTGACTCTCAAGTCCCACGCGATTACAGTGCTCAAAATGATCATCCAGAAGGCCAGCTCCGGCGTCATGGAGAGACTCAAACCTGAGTTCTTTGAAACAGTTGTGAAAGTCCTACGAAATGGAATAACCCTGCAAGGGATGAACGCTGGTCTGAAAGTGCTGTTAGCAGCTTCTCCGTGGGGAAGAAATCGCGAGTTGATGGTGGAAGCCGGTGCAGTTCATGAGTTGATTGAGATTGAACTGGGGACGCCGGAGAAAACAACGACGGAGCTGATATTAGGAATACAGTTTCATCTGTGTTCTTGCGCCAATGGGAGAGCACAGTTCGTGAGCCACAGAGGCGGCATTGCGGTGTTGACGGAGAGAATATTGAAGTTGTCACCGGTGGCCGATGAAAGAGCCATATTTGTTTTATCACAGGTATCGAAATCATGTGCTTCGCAAATAGTAATCCAAGAGATGGTTCAGCTGGGGACTTTGTCGAAGCTTTGCATGTTGCTTCAGGCAGATCATCGTTCATATCTAAAAGACAAAGCAATGGAGATCCTCAAGTCTCATTCTGAGGTTTGGAAGAACTCACCTTGCTTTCCTTTATCTTTTAAAGCAAGTTTGCACAGGTGA	1224	0.4828	MDQVEIPEYYICPISLQIMKDPVTAVTGITYDRESIERWLYTSNNTTCPVTKQTLPLDSDLTPNHTLRRLIQAWCTQNASLGVDRIPTPKPPLEKFQVLKILSHLRCPHLYLKALRQLELLAAQNHRNKRYLVEAGVPRAMVLFVLDCFQKRWIREGLEEALSLLQFVKVPQEEIKLLLQQNDQVLDSITWVLASEIMDNSVTLKSHAITVLKMIIQKASSGVMERLKPEFFETVVKVLRNGITLQGMNAGLKVLLAASPWGRNRELMVEAGAVHELIEIELGTPEKTTTELILGIQFHLCSCANGRAQFVSHRGGIAVLTERILKLSPVADERAIFVLSQVSKSCASQIVIQEMVQLGTLSKLCMLLQADHRSYLKDKAMEILKSHSEVWKNSPCFPLSFKASLHR	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele05g1008	407	FunFam	RING-type E3 ubiquitin transferase	6	80	-	-
	Lele05g1008	407	ProSiteProfiles	U-box domain profile.	5	81	IPR003613	GO:0004842\|GO:0016567
	Lele05g1008	407	CDD	RING-Ubox_PUB	10	53	IPR045210	-
	Lele05g1008	407	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	83	IPR013083	-
	Lele05g1008	407	SMART	Ubox_2	9	74	IPR003613	GO:0004842\|GO:0016567
	Lele05g1008	407	SUPERFAMILY	ARM repeat	105	392	IPR016024	-
	Lele05g1008	407	Gene3D	-	89	395	IPR011989	-
	Lele05g1008	407	PANTHER	WDSAM1 PROTEIN	3	398	IPR045185	GO:0061630
	Lele05g1008	407	Pfam	U-box domain	6	78	IPR003613	GO:0004842\|GO:0016567
	Lele05g1008	407	SUPERFAMILY	RING/U-box	3	82	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele05g1008	Lele-ChrLele05	6233067	6234290	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele05g1008	2	405	U-box Gene Family	AT3G11840	42.539	2.68e-118	350