Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1006 ATGGACGACAATATTGAAGTTCCTACCTTCTTTTTGTGTCCCATCTCCTTGGAAATCATGAAGGATCCAATCACTGTCTCCTCCGGGATTACCTACGACAGAGAGAGCATCGAGAAATGGCTCTTCTCCGGCAAAAACAAGACCTGCCCAGTCACCAAATTACCTCTCTCCGTATCAGACTCCTACGACCTCGTTCCCAACCACACCCTTCGTCGTTTGATTCAATCCTGGTGTACCCTCAACGCTTCTCACGGCATCCAGAGGATCCCCACGCCAAAACCGCCCGTCACCAAAACCCAAGTTGCTAAAATCATCAAAGACGCTTCTCGATCTTCTCATTCACCCGTGAAATACCTCCAAACGCTCAAATCCATTGCTTCCGAAAGCGACGCCAATAAACGTAGCATAGAAGCCGCCGGCGCCGTTGAATTCTTAGCATCCATTGTACTCCGTCACACAAATTTCTCCTACACACCTGAAGAGGCCAACCCTGATGACGATGGGTTTGAACTAAAAACCAGCGGAGGTGACGAAGCTTTAAGCATCCTCCATAGCCTCCACCTGTCCGAGGCTGGCTTCAAGAGTCTAGTAGCCTTCGAAAACGGATCATTCATTGACTGCTTAACCAGGATCATGCAGAGGGGATTCTACGAGTCACGAGCTTATGCTGTCTTATTGTTAAAATCCATGTTCGAAGTGGCTGATCCGACGGTTTTATCCCATTTAAAACCCGAAATGTTTGTTGAATTAGTACAGCTATTGAAAGACCAGATTTCCCAGCAAGCCTCCAAGGCTACCCTAAGAACACTGATCCAAACATGTCCATGGGGAAGAAACAGAATAAGAGCAGTGGAAGCAGGAGGCGTCTCGGTGTTGATTGAGCTTCTTCTAGATTGTAAGGACAGGAAGCCCTGTGAGATGATGTTGGTGTTGTTGGAGATGTTGTGTGGGTGTGCCGAGGGGAGAGCTGAGTTACTGAGTCATGGCGCGGGGATCGCCATAGTTTCGAAGAAGATTCTGAGGGTTTCGACGATGGCCAACGATAGGGCGGTGAGGATTCTGCTTTCCATTGCCAAGTTCTCTGCAAGTCCGAGCGTTTTGCAGGAGATGTTGCAGGTTGGCGTGGTGGCGAAGCTGTGTTTGGTGCTTCAAGTGGAGAGTTGGAGAAAGGTTCAGGACAGAGCCCGAGAGATTCTCAGAATGCATTCTCGGGCTTGGAGGAGTTCTCCATGCGTACCCAGCAATTTGCTTTCTTCTTACCCGAATTGA 1269 0.4894 MDDNIEVPTFFLCPISLEIMKDPITVSSGITYDRESIEKWLFSGKNKTCPVTKLPLSVSDSYDLVPNHTLRRLIQSWCTLNASHGIQRIPTPKPPVTKTQVAKIIKDASRSSHSPVKYLQTLKSIASESDANKRSIEAAGAVEFLASIVLRHTNFSYTPEEANPDDDGFELKTSGGDEALSILHSLHLSEAGFKSLVAFENGSFIDCLTRIMQRGFYESRAYAVLLLKSMFEVADPTVLSHLKPEMFVELVQLLKDQISQQASKATLRTLIQTCPWGRNRIRAVEAGGVSVLIELLLDCKDRKPCEMMLVLLEMLCGCAEGRAELLSHGAGIAIVSKKILRVSTMANDRAVRILLSIAKFSASPSVLQEMLQVGVVAKLCLVLQVESWRKVQDRAREILRMHSRAWRSSPCVPSNLLSSYPN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1006 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Lele05g1006 422 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Lele05g1006 422 SUPERFAMILY RING/U-box 4 83 - -
Lele05g1006 422 SUPERFAMILY ARM repeat 119 406 IPR016024 -
Lele05g1006 422 Gene3D - 101 418 IPR011989 -
Lele05g1006 422 CDD RING-Ubox_PUB 11 53 IPR045210 -
Lele05g1006 422 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Lele05g1006 422 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Lele05g1006 422 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Lele05g1006 422 PANTHER WDSAM1 PROTEIN 5 413 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1006 Lele-ChrLele05 6215467 6216735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1006 1 421 U-box Gene Family AT3G52450 55.936 2.71e-170 482