Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1001 ATGAATGACTTGTTCTCTAGCTCCTTCTCTCGTTTCCGTAGCGAGGACTCATCGCATGACCATCACCAGCACCATGTCATCGAGATGGGTTCCGTCGTGGCCTCCACCGGCCCCGGCAACCTTGACAAGTTCTTCGAGGACGTAGAATCTATAAAGGACGAGCTGAAAGACCTCGAAAGACTGAACCAGAATCTGCAGAGCTCTCACGAGCAGAGCAAGACCCTTCACAATGCTCAGGCCGTCAAGGACCTTCGCTCTCGCATGGACAGGGATGTTGCTCTTGCTCTCAAGAAGGCGAAGCTCATCAAGGTCAAATTGGAGGCCCTGGAGCGATCTAACGCCGCCTGCCGGACCCTTCCCGATTGCGGACCCGGGTCGTCATCGGACCGCACTCGGACGTCCGTGGTGAATGGTTTGAGGAAGAACATGAAGGACTCCATGGAAAGTTTCAATGAACTCAGGCAGCGGATCTTCTCCGAGTACCGGGAGACCGTGCAACGCAGGTATTTCACCGTAACCGGCGAGAATCCCGACGAGAAGACCATCGACCTCCTGATTTCTACAGGTGAGAGTGAGACGTTCCTTAGGAAAGCCATCCAAGAGCAAGGTAGGGGAAGAATACTGGACACAATCAATGAAATTCAAGAGAGGCACGATGCGGTGAAAGATTTGGAGAAGAATCTGCAGGAATTGCATCAGGTGTTCCTGGACATGGCAGTTCTGGTGCAATCCCAGGGTGAGCAATTGGATGATATTGAGAGCCACGTGGCGAGAGCGAGCTCGTTTGTGAAGAGGGGAGCCCACCAGCTACAAACAGCAAGGAAGCACCAGAAGAACACCAGGAAATGGACCTGTTATGCCATTACGCTTCTGCTTGTGATTATCTTGTTCGTCGTGCTCTTCACTGTGAGGCCATGGGAAAATAATGGAGGAAGTTCGTCGTCATCACCGCAAACACCTGCACCACCTCCCCCTCCTTCGGCTTAA 987 0.5279 MNDLFSSSFSRFRSEDSSHDHHQHHVIEMGSVVASTGPGNLDKFFEDVESIKDELKDLERLNQNLQSSHEQSKTLHNAQAVKDLRSRMDRDVALALKKAKLIKVKLEALERSNAACRTLPDCGPGSSSDRTRTSVVNGLRKNMKDSMESFNELRQRIFSEYRETVQRRYFTVTGENPDEKTIDLLISTGESETFLRKAIQEQGRGRILDTINEIQERHDAVKDLEKNLQELHQVFLDMAVLVQSQGEQLDDIESHVARASSFVKRGAHQLQTARKHQKNTRKWTCYAITLLLVIILFVVLFTVRPWENNGGSSSSSPQTPAPPPPPSA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1001 328 CDD SNARE_syntaxin1-like 210 272 - -
Lele05g1001 328 MobiDBLite consensus disorder prediction 308 328 - -
Lele05g1001 328 FunFam Syntaxin 132 204 304 - -
Lele05g1001 328 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Lele05g1001 328 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
Lele05g1001 328 SMART tSNARE_6 206 273 IPR000727 -
Lele05g1001 328 Coils Coil 211 234 - -
Lele05g1001 328 CDD SynN 41 198 IPR006011 GO:0016020
Lele05g1001 328 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele05g1001 328 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 38 168 - -
Lele05g1001 328 PANTHER SYNTAXIN 58 296 IPR045242 -
Lele05g1001 328 SMART SynN_4 36 162 IPR006011 GO:0016020
Lele05g1001 328 Gene3D - 208 304 - -
Lele05g1001 328 Pfam SNARE domain 247 299 IPR000727 -
Lele05g1001 328 Coils Coil 136 156 - -
Lele05g1001 328 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Lele05g1001 328 Gene3D - 39 171 - -
Lele05g1001 328 Coils Coil 41 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1001 Lele-ChrLele05 6187472 6188754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1001 29 328 SNARE and Associated Proteins AT3G11820 71.290 1.23e-153 431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1001 05 6187472 6188754 Lele07g1039 07 6252262 6253566 hybridization
Lele05g1001 05 6187472 6188754 Lele08g0851 08 5355551 5356871 hybridization