Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1000 ATGAACGACCTGTTCTCCGGCTCGTTCTCCCGCTTCCGCGGCGAGCAAGTCTCGCCGGACAACCAGCACCACGTCATCCAGATGGCGGACACGTCGCCGTCGAAGGATGGAGTCAACCTTGACAAATTCTTCTCGGAAGTGGAGTCCGTCAAGGAGGAGCTCAAGGAGCTGGAGAGGCTCAACCAGAGCCTCCGTGGATCCCACGAGCAAAGCAAGACTCTCCACACCGCCGAATCCGTCAAGGAGCTTCGGTCTCGCATGGACGCCGACGTCGCCCTCTCTCTCAAGAAAGCTAAGCTCATTAAGGTCCGCTTGGAAGCACTGGACCGCTCCAACGAAGCCAACCGGATCCTTCCGGGCAGAGGACCCGGCTCTTCGTCCGACCGCACTCGGACCTCCGTCGTGAGCGGCTTGAGAAAAAAGCTGAAAGACTCCATGGACAGCTTCAACAACCTCCGCCAAAAGATATCCTCAGAGTACAGGGAAACCGTGCAACGTAGGTACTACACCGTCACCGGCGAGAATCCCGACGAGAAAACCATTGACCTGCTCATCTCCACTGGTGAAAGCGAAACATTCTTGAAGAAGGCAATACAAGAGCAGGGGAGGGCGAGCATTGTGGAGACGATAAAGGAGATACAAGAGAGGAATGACGCAGTGAGGGAGATAGAGAGGAATCTGAATGAGCTGCATCAAGTGTTCATGGACATGGCGGTGTTAGTGCAGTCGCAGGGGGAACAATTGGACGACATAGAGAGCCACATGGCTCGAGCTAATTCGTTCGTAAGGAGCGGAGTTCACCAGCTCCATGTTGCTAAGAAGCACCAGAAAAATAGCCGCAAATGGACTTGTTTTGCCATCTTACTGCTTCTCATTATCGTCTTGATCATACTTCTCCCCATTCTTCTCAGAAAATGA 918 0.5359 MNDLFSGSFSRFRGEQVSPDNQHHVIQMADTSPSKDGVNLDKFFSEVESVKEELKELERLNQSLRGSHEQSKTLHTAESVKELRSRMDADVALSLKKAKLIKVRLEALDRSNEANRILPGRGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLRQKISSEYRETVQRRYYTVTGENPDEKTIDLLISTGESETFLKKAIQEQGRASIVETIKEIQERNDAVREIERNLNELHQVFMDMAVLVQSQGEQLDDIESHMARANSFVRSGVHQLHVAKKHQKNSRKWTCFAILLLLIIVLIILLPILLRK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1000 305 SMART SynN_4 35 161 IPR006011 GO:0016020
Lele05g1000 305 Coils Coil 206 233 - -
Lele05g1000 305 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele05g1000 305 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 37 167 - -
Lele05g1000 305 Pfam SNARE domain 246 298 IPR000727 -
Lele05g1000 305 Gene3D - 200 303 - -
Lele05g1000 305 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Lele05g1000 305 CDD SynN 40 197 IPR006011 GO:0016020
Lele05g1000 305 FunFam Syntaxin 132 203 303 - -
Lele05g1000 305 SUPERFAMILY t-snare proteins 38 265 IPR010989 GO:0016020|GO:0016192
Lele05g1000 305 SMART tSNARE_6 205 272 IPR000727 -
Lele05g1000 305 Gene3D - 38 170 - -
Lele05g1000 305 Coils Coil 40 70 - -
Lele05g1000 305 PANTHER SYNTAXIN 43 295 IPR045242 -
Lele05g1000 305 CDD SNARE_syntaxin1-like 209 269 - -
Lele05g1000 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1000 Lele-ChrLele05 6184699 6185708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1000 28 284 SNARE and Associated Proteins AT3G11820 73.152 1.43e-139 395