Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0998 ATGGCCATGCAAACTGTTTATTTCAAAGAAGCTGACGGAGCTACTCATAACTCCGCCGGGCATATGTCATCTGTAACTTCGGCTCCTTGGTGGAGCACGTTAGGGTCCCAAACTATTTTTGGCGAGTCTTGTGGCCAAATGAAAACTTTTCCCCTGGAGATTCCCAACTATGTAGACCAACTTGCTGCCAATAAGCAAGCAGGAAGAGGAGCTGAACAAGTGTTTGATAAAGGACACACCACTCAGTTTGCTATCTTTTCAGATGATTGTAAAATATCAGGTGATCAGAAGTCTCAAACTGGCATATCACTTCAGTCATCAATTCCTGATCCTCACACTCGTGTCGAGCTGGGAATTAATCGGCCCATGATCTGCGCAAAATATCCTTATATGGATCAATTTTATGGGCTCTTTTCAACTTATGGACCTCAAATTCCGGGCCGTATGATGCTGCCACTTAACATGGCATCTGATGATGGACCGATTTATGTCAATGCTAAGCAGTACCATGGAATCATCCGACGTCGGCAGTCCCGGGCAAAGGCTGTGCTGGAGAATAAAATGACCAAACTTCGCAAGCCTTATATGCATGAATCGCGCCATCTTCATGCGATGCGTCGCCCAAGAGGATGCGGTGGTAGGTTCCTGAACACAAAAGCTATGAAGATCAGCAATGCAAAAATTGGAAGTGAAGGGAATAAAACTGGTGATGGTCAAATGCTGTCCACTGGTTCTCAAAGCTCTGAAGTGCTGCAATCATCAAAGGAAACAGGTGGCAGCAGCACACACGTGTGGGACAGAGCTGTTCATCACACTCTTGCAGTCATGATGGATGGTCACGGTGGTGGTGGGGGCGTAGTTATGCCCACCAAATGGGTTGCAGCACCAGAAACGAAAGCCAGAAAAATCGGTGTTGCTGGGCCGATAAGGGTTCTGAAAGTTGGACTATGTAACGTTCCACCTCGCTTCTTCACTTTGTCGACCTTGTCTCTCTCCATGGCTGCCACAGCCTCTCCTTCCTCTTCTCTCTGCAATCGACTCCACAGCCTCTACGTCACTCCCTCTTCCTTCTCAATCACCCTCAAATTCCCTCTCAGACCCATTTTTCAGAAACCTCCCTACCTCAACCTCAAATCTCTCTCTCTCAATTCTTCTCCTCTCTCACTCTACCATCTTCGTTTGGCTTCTGCTGCCTTCGATGGATTCGAAGTCGCTCAAGACAGCACAAGCGCTGAGCAGGTAGAACAGGTTGAACCAGAAGCCGAACCCTCTGAAAAATCAGAACAAGAGGAGGATGACCAACAGGTATCTGACTCAAATGAAGCTGGGAGGCTTTATGTGGGAAATTTGCCCTTTTCAATGACTTCTTCCCAGCTATCCGAGATTTTTCAAGAGGCTGGCAATGTGGTGTCTGTAGAGATAGTATATGATCGCGTCACGGATAGAAGCAGAGGATTTGCATTTGTCACAATGGGAAGCCCTGAGGATGCTAAAGAAGCCATTCGGATGTTTGATGGCTCACAAGTTGGAGGTAGGACGGTGAAGGTAAACTTGCCAGAAGTGCCAAGAGGAGGTGAAAGGCTAGTGATGGGGCCAAAAGTAAGGAACAACTACAGAGGCTTCGTGGACAGCCCTCACAAGGTATATGCAGGAAACCTTGGATGGGGATTGACTTCACAGGGTCTGAGAGATGCTTTTGCTGGTCAGCCTGGCTTTGTGAGTGCCAAGGTCATCTATGAAAGGGACACCAGAAGATCTCGAGGCTTTGGCTTTGTCTCCTTCGAAACTGCTGAGGATGTTGAGGCTGCTTTGAATGCTATGAATGGTGTGGTAAGAACAATCTCTGTAGCTTTGGAGGTTCAAGGCAGGCCTCTGAGACTGAATTTGGCGACAGATAGGACAAGTTCATCTCCTTCAACAATGGATGAAACTGCAGAAGCTAATGTTGATACCTTGGAATTGGTGTCTAGCGTGAGCACATGA 1983 0.474 MAMQTVYFKEADGATHNSAGHMSSVTSAPWWSTLGSQTIFGESCGQMKTFPLEIPNYVDQLAANKQAGRGAEQVFDKGHTTQFAIFSDDCKISGDQKSQTGISLQSSIPDPHTRVELGINRPMICAKYPYMDQFYGLFSTYGPQIPGRMMLPLNMASDDGPIYVNAKQYHGIIRRRQSRAKAVLENKMTKLRKPYMHESRHLHAMRRPRGCGGRFLNTKAMKISNAKIGSEGNKTGDGQMLSTGSQSSEVLQSSKETGGSSTHVWDRAVHHTLAVMMDGHGGGGGVVMPTKWVAAPETKARKIGVAGPIRVLKVGLCNVPPRFFTLSTLSLSMAATASPSSSLCNRLHSLYVTPSSFSITLKFPLRPIFQKPPYLNLKSLSLNSSPLSLYHLRLASAAFDGFEVAQDSTSAEQVEQVEPEAEPSEKSEQEEDDQQVSDSNEAGRLYVGNLPFSMTSSQLSEIFQEAGNVVSVEIVYDRVTDRSRGFAFVTMGSPEDAKEAIRMFDGSQVGGRTVKVNLPEVPRGGERLVMGPKVRNNYRGFVDSPHKVYAGNLGWGLTSQGLRDAFAGQPGFVSAKVIYERDTRRSRGFGFVSFETAEDVEAALNAMNGVVRTISVALEVQGRPLRLNLATDRTSSSPSTMDETAEANVDTLELVSSVST 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0998 660 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 443 521 IPR000504 GO:0003723
Lele05g0998 660 ProSiteProfiles NF-YA/HAP2 family profile. 158 218 IPR001289 GO:0003700|GO:0006355
Lele05g0998 660 MobiDBLite consensus disorder prediction 228 261 - -
Lele05g0998 660 PRINTS CCAAT-binding transcription factor subunit B signature 192 215 IPR001289 GO:0003700|GO:0006355
Lele05g0998 660 PRINTS CCAAT-binding transcription factor subunit B signature 161 183 IPR001289 GO:0003700|GO:0006355
Lele05g0998 660 SMART rrm1_1 547 628 IPR000504 GO:0003723
Lele05g0998 660 SMART rrm1_1 444 517 IPR000504 GO:0003723
Lele05g0998 660 Gene3D - 159 219 - -
Lele05g0998 660 SUPERFAMILY RNA-binding domain, RBD 443 611 IPR035979 GO:0003676
Lele05g0998 660 MobiDBLite consensus disorder prediction 409 439 - -
Lele05g0998 660 MobiDBLite consensus disorder prediction 228 262 - -
Lele05g0998 660 PANTHER OS02G0815200 PROTEIN 377 633 - -
Lele05g0998 660 SMART rrm2_1 444 517 IPR003954 GO:0003676
Lele05g0998 660 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 161 215 IPR001289 GO:0003700|GO:0006355
Lele05g0998 660 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 445 515 IPR000504 GO:0003723
Lele05g0998 660 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 548 609 IPR000504 GO:0003723
Lele05g0998 660 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 546 632 IPR000504 GO:0003723
Lele05g0998 660 SMART cbf3 157 218 IPR001289 GO:0003700|GO:0006355
Lele05g0998 660 CDD RRM_HP0827_like 444 520 - -
Lele05g0998 660 Gene3D - 530 643 IPR012677 -
Lele05g0998 660 Gene3D - 400 524 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0998 Lele-ChrLele05 6173898 6179666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0998 1 295 CCAAT-HAP2 Transcription Factor Family AT3G05690 39.062 1.44e-46 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele05g0998 RRM_1 1.3e-20 CL0221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0998 05 6173898 6179666 Lele07g1036 07 6241805 6243300 hybridization
Lele05g0998 05 6173898 6179666 Lele08g0848 08 5340814 5346927 hybridization