Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0987 ATGGAGGCAAGGCACCAAAACATTGCATTTTCTAGCTCTGAAGTTTGGGCTGATGTATTGAAGGTTCCGGATATGGAAGACAAGAACAATGAAAGTCATATGACATCAGCTGCAGCCTTTGTGGAAGGGGGCATTCAAGAAGCATGTGATGACTCTTGCAGCATATGCCTTGAGGATTTTAGTGAAACCAATCCTCCAACGGTTACTACTTGCAAGCATGATTTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGGAGCTCCCAGTGCCCTATGTGTTGGCAGTCTATTAGTTTCAAGGATTCTACCAGTCAAGAATTGTTTGAGGCAGTGGTTCAGGAAAGGAATTTGAGAGCTACTTCCTCAAGAAATGCAACTATTTTCCATCATCTGGGTCTTGGTGATTTTGACTTGCAGCATTTATCCATGGGAGTAAGTGGAGCAGATATTGGAGAGAGGATAATTCAACATTTAGCTGCTGCTACAGTCATGGGAAGAGCCCGTCACCTTGGTCGGAGAGAAGGAAGTAGGACTAGGTCGTTTCCTTATGGTCGTCCTCCCTTCATAGTCTTCTCAACTCCTCCACCTAGTGCTGTTTCAGCTGCCGGAGGGGGGACTGAACCAGCTGCAATTCCTGTAGGAAATCCGTCTACCCCACTTACATCTGAAGGAGATGAACCATCACAGCAGATCCCAAGCCTTCAAACGCACAGTTCTTTACGTGCCGGATCTACTGTCATGTCTACGAATCGTGAAGGAATTCTTTTCAATGATCGAAGTTCTGCTGTCCATTCTGCACCACCTGATGAAGGCAGAGCAGGGCCATCAGAACTTCAATCATTTTCCGAGTCTCTGCGATCCAGACTTGGTTCGGTGTCTATGAGATACAAAGAGACTATTACAAAGGGCACGAGGGGATGGAAGGAAAGGCTGTTCTCTCGTAGTACTTCCATGTCTGATATCGGCTCAGAAGTTAGGAGAGAGTTGAACGCTGGAATTGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAACAAGAGAAAAGAACAATAGAGCAGGGGATAGTTCTCTGTCAAATCATTTGGCTGCAGAGACAAGCAACCCAAACAATCGTGAAGCTCATGAGGTTAGCACTCTGTGTGACAACACTCCAGCTGCTTGTTCTGCTGGCCCACGTTCAGGCTGA 1185 0.4667 MEARHQNIAFSSSEVWADVLKVPDMEDKNNESHMTSAAAFVEGGIQEACDDSCSICLEDFSETNPPTVTTCKHDFHLQCILEWCQRSSQCPMCWQSISFKDSTSQELFEAVVQERNLRATSSRNATIFHHLGLGDFDLQHLSMGVSGADIGERIIQHLAAATVMGRARHLGRREGSRTRSFPYGRPPFIVFSTPPPSAVSAAGGGTEPAAIPVGNPSTPLTSEGDEPSQQIPSLQTHSSLRAGSTVMSTNREGILFNDRSSAVHSAPPDEGRAGPSELQSFSESLRSRLGSVSMRYKETITKGTRGWKERLFSRSTSMSDIGSEVRRELNAGIASVSRLMERLETREKNNRAGDSSLSNHLAAETSNPNNREAHEVSTLCDNTPAACSAGPRSG 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0987 394 MobiDBLite consensus disorder prediction 348 394 - -
Lele05g0987 394 MobiDBLite consensus disorder prediction 354 384 - -
Lele05g0987 394 Coils Coil 326 346 - -
Lele05g0987 394 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 31 101 - -
Lele05g0987 394 MobiDBLite consensus disorder prediction 196 244 - -
Lele05g0987 394 SUPERFAMILY RING/U-box 45 101 - -
Lele05g0987 394 MobiDBLite consensus disorder prediction 261 280 - -
Lele05g0987 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 131 IPR013083 -
Lele05g0987 394 ProSiteProfiles Zinc finger RING-type profile. 53 93 IPR001841 -
Lele05g0987 394 MobiDBLite consensus disorder prediction 215 244 - -
Lele05g0987 394 Pfam Ring finger domain 51 93 IPR001841 -
Lele05g0987 394 SMART ring_2 53 93 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0987 Lele-ChrLele05 6099250 6102075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0987 50 101 C3H Transcription Factor Family AT4G00335 48.077 1.54e-13 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0987 05 6099250 6102075 Lele05g0987 05 6099250 6102075 ECH
Lele05g0987 05 6099250 6102075 Lele07g1024 07 6157271 6162399 hybridization
Lele05g0987 05 6099250 6102075 Lele08g0835 08 5258810 5262169 hybridization