Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0980 ATGGATTCAGAAGTAGTTCCATCTTCCACGAATTCAGTAAAATGTTGCGACTGCGACTGTAGTTGCTCATTAGCAGCTGATTCTTCAGCAACCTGGCTTCGTACTGTTAAACGGAAACTTGATGAGTTTGAACGGGATGACAAATTCTCTATACCTGAGTTGGATTACTCTTCAGTTGCACGGGTCCAAGTCGAAAATGAATGTAAATCGTTACGCGAGACAGTTACTAGGCAACAACAAGCAATACAAGATCTGTGTGCTGAATTGGAGGAGGAGAGAAATGCTTCAACAACGGCAGCAAATGAGGCCATGTCTATGATATTGAGATTGCAGAGGGAGAAATCAGAGATTCAAATGGAAGCCCGGCAGTTCAAGCGTTTTGTAGAGGAGAAGACGTCACATGACCAGGAGGAGCTTTTAGAATTGGAGGACTTGTTGTATAAGAGAGAGCAGACAATACAAGCGCTTACATGTGAAATTCAGGCTTATAAGCACAGGATGATGAGTTATGGCCTCACAGAATCAGAGGCAGCAGGTGAAAGGAACCTGAGCTTGGGGGAATCAGGTGATCAATATGAACTCCCCACCTATGACTACCCTCCTTTAAAATGCATTGGACATACTGCCATGGATGCCGAGAATGATGGCACATATATTGAGAAATATGCATTTGGTGAAACTCCTTCTGATCGATTGAGAAACTTGGAAAATAGAATCTCCCAAATGGAGAGAATTTCTATTCATAACCAAGTGGATGGGGATTATACGGGGAAAACTATTCTGGAGAAGGAGGTAGTTGAACAATCTCCAAGGCGGACTAGACATTTGAGAAAGACATCCAACGAATCAAGTTCATTCATAGTGGGTTCTCTCAATAGCTCTAGGAAGATGAATTGTGCCTCACAACCAGAGGATCGTTCCAATTTGAGAAGGGTGGATTATGTATCAGAAGCTGATGATGATATGGGTGATAGAGTTTATACTGTTGACTCTGTTCATACTGGGACGCCACGCAAAGGTTTTTCAGAGTCTAAATATGGAGCTGTTTATGAAGATTATTTGACTGCTCCAATGGAGTCACTGAATCATACTGCTTTTGAAGATTCCGGCATAAAGAAGCTTTACATGAGACTTCAAGCTCTTGAGGCTGATAGGGAATCGATGAGGCAGGCGATCATTTCAATGCGCAACGATAAAGCACAGGTTTTGCTACTTAAGGAAATAGCTCAACATTTGTGCAAAGGGATGTCCCCGCAAAGAAGAATGACAGTGAGGAAGCCGATTGTTGTTCGTAATTTTTCATTCTTGTCACTTTTCAAGTGGATGATATCGTTGGTTTTTTGGAGAAAGAAAGCTGGTCAAAGCAAGTATATGTTTGGGCTACCAGCCAATGGCGTGGGCTTACTAATGCTTCTGGACAAGATGCCCCGTGGGAGGCCATGGAGATGCGTCTCAGTCACCCAGTTGGGAGATTAG 1476 0.4302 MDSEVVPSSTNSVKCCDCDCSCSLAADSSATWLRTVKRKLDEFERDDKFSIPELDYSSVARVQVENECKSLRETVTRQQQAIQDLCAELEEERNASTTAANEAMSMILRLQREKSEIQMEARQFKRFVEEKTSHDQEELLELEDLLYKREQTIQALTCEIQAYKHRMMSYGLTESEAAGERNLSLGESGDQYELPTYDYPPLKCIGHTAMDAENDGTYIEKYAFGETPSDRLRNLENRISQMERISIHNQVDGDYTGKTILEKEVVEQSPRRTRHLRKTSNESSSFIVGSLNSSRKMNCASQPEDRSNLRRVDYVSEADDDMGDRVYTVDSVHTGTPRKGFSESKYGAVYEDYLTAPMESLNHTAFEDSGIKKLYMRLQALEADRESMRQAIISMRNDKAQVLLLKEIAQHLCKGMSPQRRMTVRKPIVVRNFSFLSLFKWMISLVFWRKKAGQSKYMFGLPANGVGLLMLLDKMPRGRPWRCVSVTQLGD 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0980 491 Coils Coil 61 95 - -
Lele05g0980 491 Pfam Zein-binding 70 160 IPR007656 -
Lele05g0980 491 Coils Coil 371 398 - -
Lele05g0980 491 Coils Coil 100 120 - -
Lele05g0980 491 ProSiteProfiles GTD-binding domain profile. 66 164 IPR007656 -
Lele05g0980 491 PANTHER BNAANNG28530D PROTEIN 63 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0980 Lele-ChrLele05 6059887 6062170 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0980 05 6059887 6062170 Lele14g1517 14 23306082 23309403 CCT
Lele05g0980 05 6059887 6062170 Lele15g0832 15 4814094 4819539 CCT
Lele05g0980 05 6059887 6062170 Lele16g0850 16 4759737 4762645 CCT
Lele05g0980 05 6059887 6062170 Lele05g0980 05 6059887 6062170 ECH
Lele05g0980 05 6059887 6062170 Lele07g1019 07 6123276 6125530 hybridization
Lele05g0980 05 6059887 6062170 Lele08g0828 08 5219802 5223015 hybridization