Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0957 ATGTGGGAAAGGGAGGGTGAGGGTCGAGAAAGAGGGGCAGTGAGGAGGAGGAGGAGGGTAGAGGACGAGGAAAATGGGGAGAGGAGATGAGAGAGAGCGATATCTTCGCAAGGGGTTCAACCCGTTTTCAAAGTTAACCTGTTTTTCCATTCTGCTACAATCGAAGCTCGTTTCCATACATCATTCATCACTTGCTCTCTCTTCCTCGTAGTTATCATCCGTTCGCTTTGTCTATTGAGTGCAGGCATAGTAGTATTGTCAATCGGGAAGCCAAGTTGCTGTTTGACATTTCCTTGTAATCAACGAAGTCAAATATCTGCAGATATGAGAACTTCATGGGCTGATTCTATCGACAACTCAACCATTGGTTCTTCAAATGCCAATGCTGCGCCTCCTTCTCGGTCAGCATATGTTCCACCACATCTTCGTAATAAGCCACCATCTTCAGAACCCCCTATGACATCACACCCTTCTTCGTTACTGGCCAGTGATCGGGTAAATTTTGGTGGGTCAACTGCTGGGCATCGCGGAGGAAGTTCCTTTAATAAGCCTGACTATGGAAGGCAGGACTATGGTTCTAGTGGTCGAATTGGTGGGGGTTGGAACAATGGAAGCGGAGGGTGGGACCGCGGAAGGGAGCGTGAGGTTAACCCATTTGAGAATGATGAAGCTACAGATCATACTTTTAACGAGCAAGAAAACACAGGCATTAACTTCGACGCTTATGATGATATCCCTGTGGACACTAGTGGGGATAATGTGCCTCCACCTGTAAATACTTTTGCAGAAATAGACTTGGGTGAGGCAGTGAATCAAAATATAAGGAGGTGTAGATACGTCAAACCAACTCCAGTTCAGAAGTACGCCATACCAATTTCTCTTGCGGGGCGAGATCTGATGGCTTGCGCTCAGACAGGATCAGGCAAGACGGCTGCCTTCTGTTTTCCTATCATAAGTGGAATCCTGAGGATGCCACATGTTCAAAGACCACGTGTAGCGCGAACTGCTTTCCCTCTAGCTCTTATCCTATCTCCTACCCGGGAGCTTTCCTGTCAGATACATGACGAGGCTAAAAAGTTTTCCTATCAAACTGGTGTTAAGGTGGTGGTTGCTTATGGAGGAGCACCAATAAACCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTTGTGGCAACTCCAGGACGTCTGGTAGATTTGTTAGAGAGGGCTAGGGTGTCACTGCAAATGATCAGATATTTAGCTCTCGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAAATAGTTGAACAAATGGACATGCCTCCTCAAGGCATGAGACAGACAATGCTGTTTAGTGCTACTTTTCCCAAAGAGATACAGAGACTTGCATCAGATTTCCTGGACAATTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGACCTAATTGCTCAACGGGTGGAATATGTCCTGGAATCTGACAAAAGAAGCCACCTCATGGACCTTCTTCACGCCCAGAGGGAAAATGGAATTTATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACATTGGTTGTGCATTAATGGGTTTCCTGCAACTAGCATTCATGGTGACCGATCACAGCAGGAAAGGGAACTAGCATTGAGGTCGTTCAAGAGTGGAAACACGCCAATTTTAGTGGCAACAGATGTTGCAGCACGTGGTCTTGATATTCCACGTGTAGCTCATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCATCGGATAGGAAGAACAGGGAGGGCTGGTAAAATGGGTTTAGCAACAGCCTTCTTCAATGACAATAATCTGTCATTGGCTAAGCCATTGGCCGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCACACGTTATGCTGCTAGAGCTTCCTATGGCGGTGGCAACAGAAATCGGCGTTCAGGGGGAGCCCGTTTCGGTGGCCGTGACTATAGGAGGGATAGCCAACATAATAAGGGAGCTGACTACTACGGTGCAGCAAGAGGATACGGTGTTCCCACCACTTATGGTGGAGGGTATGGTCCTCCAGGGGTTACTAGCGCTTGGGATTAG 2148 0.4683 MWEREGEGRERGAVRRRRRVEDEENGERRXERAISSQGVQPVFKVNLFFHSATIEARFHTSFITCSLFLVVIIRSLCLLSAGIVVLSIGKPSCCLTFPCNQRSQISADMRTSWADSIDNSTIGSSNANAAPPSRSAYVPPHLRNKPPSSEPPMTSHPSSLLASDRVNFGGSTAGHRGGSSFNKPDYGRQDYGSSGRIGGGWNNGSGGWDRGREREVNPFENDEATDHTFNEQENTGINFDAYDDIPVDTSGDNVPPPVNTFAEIDLGEAVNQNIRRCRYVKPTPVQKYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRMPHVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQGMRQTMLFSATFPKEIQRLASDFLDNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIYGKQGLTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNLSLAKPLADLMQEANQEVPAWLTRYAARASYGGGNRNRRSGGARFGGRDYRRDSQHNKGADYYGAARGYGVPTTYGGGYGPPGVTSAWD 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0957 715 Gene3D - 477 657 IPR027417 -
Lele05g0957 715 CDD SF2_C_DEAD 486 622 - -
Lele05g0957 715 Gene3D - 214 476 IPR027417 -
Lele05g0957 715 SMART ultradead3 278 489 IPR014001 -
Lele05g0957 715 MobiDBLite consensus disorder prediction 662 689 - -
Lele05g0957 715 MobiDBLite consensus disorder prediction 668 684 - -
Lele05g0957 715 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 474 IPR014001 -
Lele05g0957 715 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 259 287 IPR014014 GO:0003724
Lele05g0957 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 628 IPR027417 -
Lele05g0957 715 MobiDBLite consensus disorder prediction 1 20 - -
Lele05g0957 715 CDD DEADc_DDX3_DDX4 260 480 IPR044763 GO:0003724|GO:0005524
Lele05g0957 715 Pfam Helicase conserved C-terminal domain 499 613 IPR001650 -
Lele05g0957 715 SMART helicmild6 532 613 IPR001650 -
Lele05g0957 715 MobiDBLite consensus disorder prediction 117 216 - -
Lele05g0957 715 Pfam DEAD/DEAH box helicase 283 463 IPR011545 GO:0003676|GO:0005524
Lele05g0957 715 MobiDBLite consensus disorder prediction 117 132 - -
Lele05g0957 715 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 229 652 - -
Lele05g0957 715 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 652 IPR001650 -
Lele05g0957 715 FunFam ATP-dependent RNA helicase RhlB 477 656 - -
Lele05g0957 715 FunFam Probable ATP-dependent RNA helicase DDX4 221 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0957 Lele-ChrLele05 5923257 5930142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0957 243 645 Eukaryotic Initiation Factors Gene Family AT3G19760 31.527 3.20e-60 206