Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0956 ATGTTCTGTTATTTGTGGAACACTGAGCTTGTGGATTTAGGGTTGTATATCGAGGATCTATCCAGATTACCAGTTTCTCGAAAATTTAGGGCCAGTGTTCTCCCAGCTTCACGACTTCGGGAATTAGGCATTTCTGAGGATGTTTTTTTGATGAACTATCTAAGAGATATTTCTTTGCTAAAGTTGAAATATTGCTCTCTATACGAGACTCGCAAACTCTGTCAGTGTTATCAATACCTGCAATGCCGAGGCATAGTGAAGGTCCGGCTCAAATGGGTGAAAAACCGAAGTATTGATCACATAATTGACAAGGAAACGGATTTGAAGGCTGCTTGTCTACTCAAGGACGCGATTAAGCGATCGTCCACTGGTTTTCTCACAGCAAAATCTGTAGCTGACTGGCAAAAACTGCTTGGCCTCACAGTCCCGGTTCTTCGTTTCATGCGTAGGTACCCCACTCTCTTTGAAGAATTTCCACATCCTCGTTGGCCTAGTTTGCCTTGCTTCCGTTTGACAGATACTGCAGTATTGTTGGACTCGCAAGAACAAAGCATTTACGAGGCCCGCGAGAGTGATGTTGTCGAACGGCTTTGTAAGGTACTTATGATGATGAAAACTCGAACTGTGCCGCTACAATCCCTTCATCCTTTGAAATGGGATCTTGGTTTGCCGGATTGTTTTGAGAAGACACTTGTTCCAAAATACCCAGATCATTTTCTATTTGTCAAGGCCTCAAATGGTGTCACCTGCCTGCGACTAACAAATTGGTATGAGGAATTTGCAGTTTCGGCATTACAAAAGAGCAATGAAAGCAGGACATCTGGGGATGATTACAGGCAATTCAAGAGATGGCAAGCATCTCTGGTTTTCCCCATGAATTTTCCAAGGGGGTATGGAGCACAGAAGAAAGTAAGGGCATGGATGGAGGAATTTCAGAAGTTACCTTACATTTCTCCTTATGAGGACTCTAGACAAATTGATCCAAATAGTGAATTAATGGAGAAGCGAGTTGTTGGAGTTCTGCATGAATTTCTAAGTTTAACCATGCACAAGAAAACAAAGAGGAACTACTTGAGAAGCTTGAGGGAGGAGTTGAATCTTCCCCATAAGTTTACACGAATCTTCACAAGATATCCTGGTATATTTTATCTCTCACTGAAATGTAAAACAACGACTGTTACTCTTAGAGAAGGATATCAACGTGGAAAACTAGTAGATCCACATCCTATTGCTCGTGTCAGAGAGAAGTTTTATCATGTAATGAGGACGGGGCTTCTTCATCGGGGAAAAGGCGCTAACTTTATAAATCAAGAAGACTTATTGCTAAACGGTGAAGTGGATGAAACAGGGCTGGGAGAATCTGAGGAGGAAGAGTCAGGAACAGGTGATGAATTCTATGAGGTTGAAGATTCAGACCTAGATGGAGCGTCTGATGGAGAGTAG 1443 0.4241 MFCYLWNTELVDLGLYIEDLSRLPVSRKFRASVLPASRLRELGISEDVFLMNYLRDISLLKLKYCSLYETRKLCQCYQYLQCRGIVKVRLKWVKNRSIDHIIDKETDLKAACLLKDAIKRSSTGFLTAKSVADWQKLLGLTVPVLRFMRRYPTLFEEFPHPRWPSLPCFRLTDTAVLLDSQEQSIYEARESDVVERLCKVLMMMKTRTVPLQSLHPLKWDLGLPDCFEKTLVPKYPDHFLFVKASNGVTCLRLTNWYEEFAVSALQKSNESRTSGDDYRQFKRWQASLVFPMNFPRGYGAQKKVRAWMEEFQKLPYISPYEDSRQIDPNSELMEKRVVGVLHEFLSLTMHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVTLREGYQRGKLVDPHPIARVREKFYHVMRTGLLHRGKGANFINQEDLLLNGEVDETGLGESEEEESGTGDEFYEVEDSDLDGASDGE 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0956 480 MobiDBLite consensus disorder prediction 446 480 - -
Lele05g0956 480 MobiDBLite consensus disorder prediction 449 480 - -
Lele05g0956 480 Pfam Plant organelle RNA recognition domain 93 424 IPR021099 GO:0003723
Lele05g0956 480 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 79 453 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0956 Lele-ChrLele05 5919704 5921541 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0956 05 5919704 5921541 Lele05g0956 05 5919704 5921541 ECH
Lele05g0956 05 5919704 5921541 Lele07g0996 07 5998847 6000685 hybridization
Lele05g0956 05 5919704 5921541 Lele08g0810 08 5093420 5094700 hybridization