Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0951 ATGGACAAGTCCGACAGAGAGACTCATAACTTCATGAACGTTCAGTCCTTCTCGCAGCTTCCATTTATCCGCCCTCCTCCTCTCAAAGAGAGGCCCGTTAAGCTCTTCGGCATTGAATTCCCCAAAGCCGATTCTCCTAATTCTACCCCTGATGATGCTCACTCCTTCGACGCTACCACCACCACCAACAATAATGCTTTTGACCTTGATTCCAAGGATTCCGCCGCCGCCGCCGACAACAACTCCGAGACCAGCCGCCGGTTTGAATGCCATTACTGTTGTAGAAACTTCCCCACCTCTCAGGCTTTAGGTGGCCACCAAAACGCCCATAAACGAGAGCGTCAGCAAGCCAAGCGAGCCCACATTCAGTCCGCCATGGTGCACAATAGCCTCTCCGGCGACGCCGCCGCTCATGTCTATGGCCTCATGAACTACCGCCTCGGGTCCGCCCCATACCCCGCCTGGCATAATAGTAACTCTGTCGGTGGAAGGTTTTATGGATGCCATGGCGCTAGCTCATATCCTCATCTGGAACCCATCAACGGTAGCCCCTTAGCCTTTTGGCGGATCCCCTCCACCGTCCAAAATAACCCTACTACTACGACTTTCAACCGTGACCGTTCGTTGCACTTACATCATCCGTTGCCCTTGCTTGCCGGTGACGAAATTAACCACGGGGCTTCTCATAATCAGGTCGTCGGTTCCGCTTCGCAGAATCGCCTTGTCTATGACTCTAAACCCGGCGTTCACGACCATGTGAGTTTGGATCTTCACCTGTGA 780 0.5346 MDKSDRETHNFMNVQSFSQLPFIRPPPLKERPVKLFGIEFPKADSPNSTPDDAHSFDATTTTNNNAFDLDSKDSAAAADNNSETSRRFECHYCCRNFPTSQALGGHQNAHKRERQQAKRAHIQSAMVHNSLSGDAAAHVYGLMNYRLGSAPYPAWHNSNSVGGRFYGCHGASSYPHLEPINGSPLAFWRIPSTVQNNPTTTTFNRDRSLHLHHPLPLLAGDEINHGASHNQVVGSASQNRLVYDSKPGVHDHVSLDLHL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0951 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Lele05g0951 259 SUPERFAMILY beta-beta-alpha zinc fingers 85 115 IPR036236 -
Lele05g0951 259 Gene3D Classic Zinc Finger 66 138 - -
Lele05g0951 259 MobiDBLite consensus disorder prediction 40 80 - -
Lele05g0951 259 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Lele05g0951 259 PANTHER ZINC FINGER PROTEIN GIS 1 259 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Lele05g0951 259 MobiDBLite consensus disorder prediction 48 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0951 Lele-ChrLele05 5885509 5886288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0951 1 259 C2H2 Transcription Factor Family AT3G58070 40.590 1.28e-47 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0951 05 5885509 5886288 Lele13g1571 13 24773739 24774470 CCT
Lele05g0951 05 5885509 5886288 Lele14g1494 14 23164763 23165521 CCT
Lele05g0951 05 5885509 5886288 Lele15g0852 15 4951214 4951945 CCT
Lele05g0951 05 5885509 5886288 Lele16g0871 16 4909558 4910316 CCT
Lele05g0951 05 5885509 5886288 Lele05g0951 05 5885509 5886288 ECH
Lele05g0951 05 5885509 5886288 Lele07g0990 07 5958430 5959209 hybridization
Lele05g0951 05 5885509 5886288 Lele08g0804 08 5059370 5060149 hybridization