Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0938 ATGGAGTTGGCCTTGAGCTTAGGGGACGCACCAAAACCCTTCTCTTTTCTTGACAAGCTCACAAACATGCCCCGCCAAGAACCTTCCTTTTGCATACCCCTCGCCGCTGCCACCAGATGGAATCATCACAGAGAAGGCGATGAAGACCATCGGACTTCATCAGCTCCGCCTGTTCAGCTCGATCTTCTTCCCTTCACCCCGCTTCCTCCAAACCCTCCTCCTCCTCCACCTCCGCGCCTTTCAATTCCTTGGCTCTCCCGTCCATTGGGTGGCGAAGAGATTTCATCAGATAGAGTGGTGAGGGGTTTGGATGTGAACAGTGCGCCGGCGGACTTAGATGAGGCCGATGACGATGCGGCACTCTCATCTCCCAACAGTGAGATTTCATCATTTCACATGGATTTCCGCGTCGGAAATAGTCATGGATCCGGCAGTTACAAGAGAGAGCACGAGGGCAACGCCGACAGACCCAGCGACGATGACGAAAACGCAGCAACTCGCAAGAAACTCCGACTGTCTAAGGAACAGTCCGCTTTCCTGGAAGAGAGCTTCAAAGAACACACCACTCTCAACCCAAAGCAAAAACTTGCTCTGGCGAAGCAGTTAAACCTTCGTCCTCGCCAAGTGGAAGTTTGGTTCCAAAATAGACGTGCTAGGACGAAATTGAAGCAGACGGAAGTAGATTGTGAGTATTTGAAGAGATGCTGCGAGACGCTGACGGAGGAGAATAGGAGGCTACAGAAGGAGGTTCAAGAATTACGGGCTTTAAAGACATCGCAGCCGTATTACATGCAGCTTCCTGCCACCACTCTCACCATGTGTCCCTCCTGTGAGAGGGTCGTTTCAAAATCTTCAATCGCCGGAACCACATCCACCTCGACGGCGACCGCCACTTGCACAAGCAGTGCGTCTCGAATCCCAGTAGGGCTGTCTCTGGGCAAGCCCGGAATGCTACCCTTGGGCAACGGTGAAGCCCAAGCTCAGCAGGCCCAGGCTCATCAGACGGCTCCGTGA 1014 0.5345 MELALSLGDAPKPFSFLDKLTNMPRQEPSFCIPLAAATRWNHHREGDEDHRTSSAPPVQLDLLPFTPLPPNPPPPPPPRLSIPWLSRPLGGEEISSDRVVRGLDVNSAPADLDEADDDAALSSPNSEISSFHMDFRVGNSHGSGSYKREHEGNADRPSDDDENAATRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKTSQPYYMQLPATTLTMCPSCERVVSKSSIAGTTSTSTATATCTSSASRIPVGLSLGKPGMLPLGNGEAQAQQAQAHQTAP 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0938 337 MobiDBLite consensus disorder prediction 143 168 - -
Lele05g0938 337 Pfam Homeodomain 167 221 IPR001356 GO:0003677
Lele05g0938 337 MobiDBLite consensus disorder prediction 109 168 - -
Lele05g0938 337 Pfam HD-ZIP protein N terminus 96 131 IPR006712 GO:0005634
Lele05g0938 337 MobiDBLite consensus disorder prediction 314 337 - -
Lele05g0938 337 MobiDBLite consensus disorder prediction 65 84 - -
Lele05g0938 337 FunFam Homeobox-leucine zipper protein 18 153 228 - -
Lele05g0938 337 SUPERFAMILY Homeodomain-like 157 224 IPR009057 -
Lele05g0938 337 MobiDBLite consensus disorder prediction 65 83 - -
Lele05g0938 337 ProSitePatterns 'Homeobox' domain signature. 198 221 IPR017970 GO:0000981|GO:0006355
Lele05g0938 337 Coils Coil 229 259 - -
Lele05g0938 337 CDD homeodomain 167 224 IPR001356 GO:0003677
Lele05g0938 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 52 299 - -
Lele05g0938 337 SMART HOX_1 165 227 IPR001356 GO:0003677
Lele05g0938 337 Gene3D - 171 221 - -
Lele05g0938 337 SMART halz 223 266 IPR003106 GO:0006355|GO:0043565
Lele05g0938 337 ProSiteProfiles 'Homeobox' domain profile. 163 223 IPR001356 GO:0003677
Lele05g0938 337 Pfam Homeobox associated leucine zipper 223 257 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0938 Lele-ChrLele05 5776644 5778003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0938 77 279 Homeobox Transcription Factor Family AT3G60390 54.545 7.91e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele05g0938 Homeodomain 2.6e-15 CL0123