Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0937 ATGGGGGAAGAGACATCGGCCGCGATGAACCTCGATTTGAATCTGGGTCCTGATCCAGAGCCTGCAGCTGGCTCCATAACCAATGAATCCGTGAGCTTAGAGGATTGGATTGAAGAGCCTAGGTTTAGCGAATCAGTTAGACATAGGACTCGACAGAGGTGGAGGTGGCGGCATCTTCACATTAGTCCTCCTGAACCCCATAGTAGCTTTATCTTTTCGCCTGAAGTCCAACATATCTCAATGGAATTGAATCATTTGCTGGCCAACCCTGGTAATGGAAGTGCATTGCAGGCTGGGGAAGGTAGCGTGGCAGCTGAAGATAGGACAGAGGTGGCACCAAAAGCATGTGAGATAAACAATGGTGTTACGGAGGATGAAGCATCACATAAGAAAGATGATGTTGAAAAGGGTAGTGGAAATGATGGGAGCTTTTTTGATTGTAATATCTGTTTGGACCTGGCTAGAGATCCTGTTGTGACTTGCTGTGGTCATTTGTTTTGTTGGCCATGCCTCTATCGGTGGCTACATGTCCATTCAGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTAACATTTAAAAATGTTACACCAATATATGGTCGTGGAAACAATGTCCGTCAACCTGAGGAAGATCCTACTCTTAAAGTCCCTCTTAGACCCCATGCTAGGCGTGTTGAAAGTCTGAGACAAACCATTCATCGAAATGCATTTGCATTCCCAGTGGAAGAGATGATTCGGCGTCTTGGAAGTAGATTCGATCTCTCTCGAGATGTAGGCCAGCCGCATGAGCCTGACAATGCCAGGGAAGCAGCCGACAGAACCACTACGTTGTTAAATAGGTTTTTGACCTCTCGAGCATTACGAAGAGAGCATATTCATGGGGAAACTGCAGATGATGTAGTTGACTTAACTCAAAACAACATTGGTGGCCCTGAGGCAGGGGATAACCGCAGGGTTCAATCCCTTTTACGCCGAAGAACACAGTCACATAGAACAACATTTTCTTCTCTTTCATCAGCTCTGAGTTCTGCTGAGAGATTTGTTGAGGCATATATCCGTAGCCATTCTATAGGTAGAAACCAAGAGCAGCCTCCACCGGTGGATGATAGAGATTCCTTTTCAAGTGTTGCTGCTGTTATACGCTCAGAGAGTCAAGTAGACACTAATGTAGAAATTGATTCCATGGTATCCTTGTCAACATCCTCTTCCAGGAGGAGAAATGACGCGTCTCGGGCTTCTGATGTGGATAGCGGAGATTCTCGGGCTCCCAGGCGAAGACGTTTGAACTGA 1293 0.464 MGEETSAAMNLDLNLGPDPEPAAGSITNESVSLEDWIEEPRFSESVRHRTRQRWRWRHLHISPPEPHSSFIFSPEVQHISMELNHLLANPGNGSALQAGEGSVAAEDRTEVAPKACEINNGVTEDEASHKKDDVEKGSGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTFKNVTPIYGRGNNVRQPEEDPTLKVPLRPHARRVESLRQTIHRNAFAFPVEEMIRRLGSRFDLSRDVGQPHEPDNAREAADRTTTLLNRFLTSRALRREHIHGETADDVVDLTQNNIGGPEAGDNRRVQSLLRRRTQSHRTTFSSLSSALSSAERFVEAYIRSHSIGRNQEQPPPVDDRDSFSSVAAVIRSESQVDTNVEIDSMVSLSTSSSRRRNDASRASDVDSGDSRAPRRRRLN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0937 430 MobiDBLite consensus disorder prediction 392 407 - -
Lele05g0937 430 Pfam Zinc finger, C3HC4 type (RING finger) 147 187 - -
Lele05g0937 430 SMART ring_2 147 187 IPR001841 -
Lele05g0937 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 232 IPR013083 -
Lele05g0937 430 CDD RING-HC_AtRMA_like 145 189 - -
Lele05g0937 430 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Lele05g0937 430 ProSiteProfiles Zinc finger RING-type profile. 147 188 IPR001841 -
Lele05g0937 430 SUPERFAMILY RING/U-box 143 200 - -
Lele05g0937 430 FunFam E3 ubiquitin-protein ligase RMA3 115 236 - -
Lele05g0937 430 MobiDBLite consensus disorder prediction 408 430 - -
Lele05g0937 430 MobiDBLite consensus disorder prediction 392 430 - -
Lele05g0937 430 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 126 327 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0937 Lele-ChrLele05 5764713 5766005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0937 1 421 C3H Transcription Factor Family AT3G58030 53.394 2.46e-133 389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0937 05 5764713 5766005 Lele05g0937 05 5764713 5766005 ECH
Lele05g0937 05 5764713 5766005 Lele07g0975 07 5848566 5849861 hybridization
Lele05g0937 05 5764713 5766005 Lele08g0792 08 4955910 4957202 hybridization