Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0924 ATGGATGCTCGTAAGAGAGGGAGGCCCGACTCTGGCATCAACGTTAACGGTGCCCTCAAGAAGACCAAGCAAGAATTGGAGTCCTTATCAACTGGGGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACGGCTGGCTGCCCTTTTGGAGAGGGTTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAACGCTGTTGCTCAGATGATGAATTTAGCCCCTGTTACACCTGCTGCTTCTAGAAATGTTGCAGCCCCACCACCAGTTCATAATGGCTCCTCTCCTGCTGTCAAAACTCGCATATGCAATAAATATAATTCTGCAGAAGGCTGCAAATTTGGTGAGAAATGTCATTTTGCACATGGTGAATGGGAGCTTGGCAAGCCTATTGCTTCTTCGCTAGAAGATCATCGTGGTATGGGACCTATTCCAGGCCGTATTGCTCCTAATCGAATGGAACCTCCACCTGGTCCTATGGCTAGTTTTGGAGCCAATGCCACTGCCAAGATAAGTGTAGAAGCATCCTTAGCTGGAGCAATCATTGGGAAGGGCGGTGTAAACTCTAAGCAGATCTGTCGCCAAACAGGAGCCAAACTATCAATTCGGGATCATGAGTTAGATCCAAATCTCAGAAGTATTGAACTTGAGGGAACCTTTGAACAAATTAAGGAAGCTAGTAACATGGTGAAAGAGTTGCTTGCAACCATTTCAATGTCTGCGCCACCTAAAATCCCCGGTGTTCCCAGTGCTCCAGCCCCACCTGGAAGCAATTATAAGACCAAGCTGTGTGAGAATTTTGCCAAAGGATCTTGTACCTTCGGAGAAAGATGTCACTTTGCACATGGGGCTTCTGAACTGCGTAAAACAATAGTATGA 882 0.466 MDARKRGRPDSGINVNGALKKTKQELESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLAPVTPAASRNVAAPPPVHNGSSPAVKTRICNKYNSAEGCKFGEKCHFAHGEWELGKPIASSLEDHRGMGPIPGRIAPNRMEPPPGPMASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHELDPNLRSIELEGTFEQIKEASNMVKELLATISMSAPPKIPGVPSAPAPPGSNYKTKLCENFAKGSCTFGERCHFAHGASELRKTIV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0924 293 CDD KH-I 169 232 - -
Lele05g0924 293 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Lele05g0924 293 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 134 IPR045877 GO:0003729
Lele05g0924 293 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Lele05g0924 293 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Lele05g0924 293 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Lele05g0924 293 SMART kh_6 166 236 IPR004087 GO:0003676
Lele05g0924 293 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Lele05g0924 293 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Lele05g0924 293 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Lele05g0924 293 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Lele05g0924 293 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Lele05g0924 293 Pfam KH domain 170 233 IPR004088 GO:0003723
Lele05g0924 293 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Lele05g0924 293 Gene3D K Homology domain, type 1 164 258 IPR036612 GO:0003723
Lele05g0924 293 Gene3D - 92 130 - -
Lele05g0924 293 Gene3D - 259 291 - -
Lele05g0924 293 SUPERFAMILY CCCH zinc finger 258 290 IPR036855 GO:0046872
Lele05g0924 293 SUPERFAMILY CCCH zinc finger 98 129 IPR036855 GO:0046872
Lele05g0924 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 156 237 IPR036612 GO:0003723
Lele05g0924 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Lele05g0924 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Lele05g0924 293 FunFam Zinc finger CCCH domain-containing protein 254 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0924 Lele-ChrLele05 5686009 5690678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0924 35 134 C3H Transcription Factor Family AT1G68200 26.000 2.49e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele05g0924 KH_1 1.5e-11 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1541 13 24590308 24593823 Lele05g0924 05 5686009 5690678 CCT
Lele14g1461 14 22974390 22981412 Lele05g0924 05 5686009 5690678 CCT
Lele15g0884 15 5133857 5136900 Lele05g0924 05 5686009 5690678 CCT
Lele05g0924 05 5686009 5690678 Lele07g0962 07 5762274 5767381 hybridization
Lele05g0924 05 5686009 5690678 Lele08g0779 08 4873814 4877914 hybridization