Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0920 ATGGTTGATTTCCCAGGGCGAGCTCAATTTCAGCAGAGCCACGGACTAAACGGGGATTCTAATTCTCAGTTTGGTATTAGTCCTTGTGAATACATGGATATCAATCAGGCCTGGAATATGGGAAGTTGCAGCCAAACACTCGCCGTCCCCGCCGGAGGAGGAGTCCAACAACAACAACAACAACCACCACCAAACCAAGGAGGCCCTGCAAAATTCTCCGCCACGGCCACCATCATGAGCCATTTTGAATCTCCACCTTCTGCTTTTTACGCCACTGAACGATGCATGGGGTTTCAGGTTCAGCAACATGATTCCCAGCTTGGTAATCCCTCTTTGACCTCTCAGTTCTCCAAGCTTAACGACTTGAATTTCCCTCTTTATCAGTCTGACCCGAGCTTCGAATCTTCCAATAACACCCTGCAAGCAATGGTAATGAAATCTTCATTGAGCAATAACCAATACCGTAGATCCCCTGAAAAATCCAATAAATTTTCTTACGGGAATTTGCCCACCACCACCAAGTTTCTTCCTATTCAACAACACAGCTTGTTTGTTAACGATTCTGCCTCAGTTGGTCTCTGCTCATATAATTTACATGTTGATCAGATGAGTTTCACTTCTCAGCAAGAGAATAAACTGTCTCCATCAGAAGGGAGTGTTTCAACTGTTTCTGGAAACCAGAGTTCCAATGGGAAAACAGTTTCAAGCAAAACTCGTATTAGGTGGAACCAGGATCTTCATGAGAAATTCGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAAAAAGCCACACCGAAAGCTATATTAAAGCTGATGGACTCCGATGGATTAACCATCGTCCATGTGAAGAGTCATTTGCAGAAATACAGAATTGCAAAATACATGCCAGACTCAGCTCAAGGAAAGCCTGATAAACGATCCAATGTAGAAGATGTGCATCATCTTGACACCAAAACTGGGTTGCAGTTAAGAGAGGCACTTCAGCTGCAGTTAGATGTTCAAAGGCGCCTTCATGAACAGCTAGAGATTCAGAGAAAGCTGCAGTTGAGAATTGAGGAACAGGGGAGGCAGCTGAAGATGATGTTTGATCAGCAGCAGAAGACGAGTGATAGCCTCTTGAATACTCGGAATTTGAGCAGCACAGCCAATGATAATAATAGCTATACATCAAATAATCACAAGTATTTTGAATTATCAACTTCTGAAGGGTCTGGGAATTCTTTCTTCCATTCCAAGATAAGTTAG 1245 0.4353 MVDFPGRAQFQQSHGLNGDSNSQFGISPCEYMDINQAWNMGSCSQTLAVPAGGGVQQQQQQPPPNQGGPAKFSATATIMSHFESPPSAFYATERCMGFQVQQHDSQLGNPSLTSQFSKLNDLNFPLYQSDPSFESSNNTLQAMVMKSSLSNNQYRRSPEKSNKFSYGNLPTTTKFLPIQQHSLFVNDSASVGLCSYNLHVDQMSFTSQQENKLSPSEGSVSTVSGNQSSNGKTVSSKTRIRWNQDLHEKFVECVNRLGGAEKATPKAILKLMDSDGLTIVHVKSHLQKYRIAKYMPDSAQGKPDKRSNVEDVHHLDTKTGLQLREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGRQLKMMFDQQQKTSDSLLNTRNLSSTANDNNSYTSNNHKYFELSTSEGSGNSFFHSKIS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0920 414 SUPERFAMILY Homeodomain-like 235 291 IPR009057 -
Lele05g0920 414 Coils Coil 324 344 - -
Lele05g0920 414 Pfam Myb-like DNA-binding domain 241 290 IPR001005 -
Lele05g0920 414 Pfam MYB-CC type transfactor, LHEQLE motif 322 368 IPR025756 -
Lele05g0920 414 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 237 292 IPR006447 GO:0003677
Lele05g0920 414 MobiDBLite consensus disorder prediction 1 21 - -
Lele05g0920 414 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 218 392 IPR044848 GO:0003700
Lele05g0920 414 MobiDBLite consensus disorder prediction 51 72 - -
Lele05g0920 414 Gene3D - 236 295 - -
Lele05g0920 414 MobiDBLite consensus disorder prediction 209 238 - -
Lele05g0920 414 FunFam Myb family transcription factor 236 294 - -
Lele05g0920 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 236 294 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0920 Lele-ChrLele05 5656114 5658150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0920 227 392 G2-like Transcription Factor Family AT3G04450 50.000 3.00e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele05g0920 Myb_DNA-binding 3.8e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0920 05 5656114 5658150 Lele07g0958 07 5725496 5732308 hybridization
Lele05g0920 05 5656114 5658150 Lele08g0776 08 4839065 4847189 hybridization