Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0919 ATGCTTCTTCAAAGGAAGAGCTTCGCTTTCTCCTTGACCCGCTCGCCAAGCCCCAGCTTGTTGATCTTCTCGCTAAACTAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGACTTGGCCTGGAATACCAGTTCGGAAACCTTGTGTGCTGCATTTCAAGAACATGGAGAAATTGAGGAGGGGGCTGTTATATATGATAAAGCAACAGGAAAGTCCCGAGGTTATGGTTTCATCACTTTCAAACATATGGAATCAACTCATCGTGCATTAAGAGCACCAGGCAAGTTAATTGATTTTAAAAGCTCCCATTTGTATCCACCTTTTTCTGTTTTTCCTCATTCAGCAGATGCTACAAAATGGCATTTTGTCAAACAAAGGAGAATAGAGTGTATAGCTTTAAAATGGAATTCACTGATGGGCAGGTTGTCTGTCTATAATCTAGCTGCTGAGGGCCTAAGCGGAGCAAGTAATGCCCCTGATCTTTCCCTAAGGAAGCTGTACATTGGAAGCTTATCACCAGAAGTCAGTAGTGAGATGTTGCTTAAATTTTTTGGGAGGCATGGTGAAATAGAGGAAGGCTCCGTTGCGTATGACAAGGATACAAATGAATCTCGTGGTTTTGGCTTTGTAACATATAAGAAGGCAGAAGATGCAAAGAAGGCTATGGATGATCAAGAAAAGGCTCTTGGGCCTCTGATCACGTTAACTGTTGTTATTCATAATGCTTTGAACTGTAATTCGGTAGCACTTCCAGGTTATAACCTCAGCAATCAAAGTTCTTATCATAGCGTTAATTTGCCTCAAGAGTTGTGCTGTATAGACACTGAAGCTATAGCCCATTGCATTCTGTGGTTGCAGGGGAGGAATATAATTTTAAAATATGCGGATTCCCACAAGGGCAAAATAGGGCAGCCATCAGGGGTTCCAATGACAGCCTTACCTATGGCTCCTCTGTTTGTGCAGATGCAGCATGTCAAAACAAATATTAGCAATCCCCAAGTTGGCTACAATTACCCTCAGACCGTAGCATCATACCCTGCACCTTCTTATCCAAGTCCTCCCACCGCACCTGCACCTTATCCTACGCAAGGCCAAATTTCTTATCCTCCAGTTTCTGGCAAGTCAACTGCGCCTGTTGGAATGAACAACTACCCATATTACTATCCTAAGCAATAG 1200 0.4275 MLLQRKSFAFSLTRSPSPSLLIFSLNXEIKSIASADPVHRKLFVRDLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITFKHMESTHRALRAPGKLIDFKSSHLYPPFSVFPHSADATKWHFVKQRRIECIALKWNSLMGRLSVYNLAAEGLSGASNAPDLSLRKLYIGSLSPEVSSEMLLKFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKKAEDAKKAMDDQEKALGPLITLTVVIHNALNCNSVALPGYNLSNQSSYHSVNLPQELCCIDTEAIAHCILWLQGRNIILKYADSHKGKIGQPSGVPMTALPMAPLFVQMQHVKTNISNPQVGYNYPQTVASYPAPSYPSPPTAPAPYPTQGQISYPPVSGKSTAPVGMNNYPYYYPKQ 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0919 399 Gene3D - 154 238 IPR012677 -
Lele05g0919 399 Gene3D - 26 109 IPR012677 -
Lele05g0919 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 104 IPR000504 GO:0003723
Lele05g0919 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 305 IPR000504 GO:0003723
Lele05g0919 399 SUPERFAMILY RNA-binding domain, RBD 24 105 IPR035979 GO:0003676
Lele05g0919 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 231 IPR000504 GO:0003723
Lele05g0919 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 105 IPR000504 GO:0003723
Lele05g0919 399 SMART rrm1_1 173 246 IPR000504 GO:0003723
Lele05g0919 399 SMART rrm1_1 41 113 IPR000504 GO:0003723
Lele05g0919 399 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 32 101 - -
Lele05g0919 399 SUPERFAMILY RNA-binding domain, RBD 166 231 IPR035979 GO:0003676
Lele05g0919 399 MobiDBLite consensus disorder prediction 373 387 - -
Lele05g0919 399 MobiDBLite consensus disorder prediction 357 388 - -
Lele05g0919 399 MobiDBLite consensus disorder prediction 357 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0919 Lele-ChrLele05 5651781 5654843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0919 168 237 C2H2 Transcription Factor Family AT2G19380 35.714 3.34e-08 53.5