Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0902 ATGGATTCCAATCCCTTTCTCAATTATCAACACCAACGTCAGCCCAATTCTGGGTTGCTTCGCTATCGCTCTGCGCCGACTTCGGTTCTTGCAAATTTCACGCAGTCCCTTGGTTCTGATCTCATTAAGGGCAATAACCCTGGGGAGACTTCTAAATCCGAGAAATTAATCTCTATATTCGTAAATAACGACGACCTGGATTCGTCTAGTTTCCAGGAATTCGAAGCCAAGGCGCCTAAAGCACAGACCGAGGCCGCACTCAACCATATGAACTCCTATAATGGTTTGCCCCCTCACTACCCAAGGCAGAATTCCACAGCGAGTTCTGCCATGGATAATTCATATGGACTGGTGGAATCACTGGGAATGGATCAAACGCAGCGGAAGAGCTTCACTACGAATCTTCTCAGGCAAAGCAACTCCCCTGCCGGGCTTTTCTCCAACATTTCCTTTCCTAATGGGTATTCCACCGTTAAGGGTGTTGGAAACTATGGTGTGGCGAATGGCAGTAACGGTGAAGGGAGTCCATCCATGAGCAGATTGAAGAATCAGTTTGGCTTCTTATCAAGAAGTAATTCTTCCATAGGAATGTTGTCACAGGTATCTGAGATAGAGGGTGAGAGCATTGAAGCAACCAACCCTGATAATGGGGGCTTTGGATCTGTGAATGGTCATGGCCCTGTGTTTCCATACAGTTCCTGGAATGATGCGTCCCATCTCTCAGAAAATCTCGCTGGCTTGAAAAGAGAGCCAAGTGACAGTGAAAAACTATTTTCTAATGCTCAGAATGGACCGCTAGGAAATCGGGTTCACATGTTATCTCATCACTTGAGTTTGCCAAAACCTTCAACAGATATGGGCGCCATGGAGAAGTTTCTTCAATTTCCAGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGTGCTACCCATCCTCGAAGCATTGCAGAAAGGGTAAGAAGAACTCGGATCAGTGAACGAATGAGAAAACTTCAAGAGCTAGTCCCAAACATGGACAAGCAAACGAACACAGCAGACATGTTGGACTTGGCCGTTGAGTACATTAAAGATCTCCAAAGACAATTCAAGACTCTCAGTGAAAAAAGGGCAAACTGCAACTGTATGAGCACGCAGAAGACAGATACAAATCATGACGTTTGA 1164 0.4553 MDSNPFLNYQHQRQPNSGLLRYRSAPTSVLANFTQSLGSDLIKGNNPGETSKSEKLISIFVNNDDLDSSSFQEFEAKAPKAQTEAALNHMNSYNGLPPHYPRQNSTASSAMDNSYGLVESLGMDQTQRKSFTTNLLRQSNSPAGLFSNISFPNGYSTVKGVGNYGVANGSNGEGSPSMSRLKNQFGFLSRSNSSIGMLSQVSEIEGESIEATNPDNGGFGSVNGHGPVFPYSSWNDASHLSENLAGLKREPSDSEKLFSNAQNGPLGNRVHMLSHHLSLPKPSTDMGAMEKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQRQFKTLSEKRANCNCMSTQKTDTNHDV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0902 387 Gene3D - 310 383 IPR036638 GO:0046983
Lele05g0902 387 FunFam Transcription factor bHLH130 family 310 379 - -
Lele05g0902 387 SMART finulus 315 365 IPR011598 GO:0046983
Lele05g0902 387 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 376 - -
Lele05g0902 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 359 IPR011598 GO:0046983
Lele05g0902 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 376 IPR036638 GO:0046983
Lele05g0902 387 Pfam Helix-loop-helix DNA-binding domain 314 360 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0902 Lele-ChrLele05 5571131 5573213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0902 1 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 50.900 4.04e-103 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele05g0902 HLH 3.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0902 05 5571131 5573213 Lele05g0902 05 5571131 5573213 ECH
Lele05g0902 05 5571131 5573213 Lele07g0941 07 5644295 5646378 hybridization
Lele05g0902 05 5571131 5573213 Lele08g0761 08 4752306 4754321 hybridization