Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0898 ATGATAACAGGAGTGAAAAGCGGGTTCGAAGTACTCCGAAAACTTCAGAGTACGTGGGAGTTAGCAGGTGCGTTCCAGAATGAAGTTGACGCAGCAAAAGCGCGCGACTTGTTTGCCATCAAATTATGGGGCGAGTCCGCTCGCACTAATTTTCCTCCGAGTACCTACGAGAAAGAGCTCTTGGAAATGAAGGATATGAGCAGAGAAGAGTGCCTTGCTGCTATCAGAAAGATGAGTAATGATGATAAGGCGAAGAGGTTGCTTAGTAAAGGCCTCTCAGTTTATCGTGGAGTCTACAGGATCCCAGAGCAGAATAGATGGCAAGCCAGGGTGGGTAAAGGCAAAGACACCCGAAACCTTTACGTGGGCACATTTGAAACAGAGGAGGAGGCGGCGAGAGCGTATGATATAGCGACAATAAGATTGAAGGGCCCGACCGCCGCTGCAAATCTGAATTTCGACAGGCAGTCTTATGATATCGAAAGCATTCTTAAAAGTACTAAGATTCCCATCGGAAAGGGTGCTTCTAAGATGATCAGGAAATATACAGCGGATGAGATACTTTTGCGCATCACTAACAACAACAATCCGTACCCATCACCTTCGACGGCCTCCTCCGAACTACTGTATCATCGGAACCCTAATATCGTGAACACCGACGAGTCAGTGAGTGAGGTTGGAGTTGCGATTGGCGATCCATTATTCGGAGCAGAAGACCAGAGGGTGGTGAATAGCGAAGCGTTTGTTTATGCGGATGATAATGATGATCGCCTGAAAATCCCTGTGGATGGGTTTTCTGAGTTTGCAATAGGGGTAGAAGATAATAATACAGAATCTCTGTGGAATGAAGCGTATGGTGAATCTCTGATGGCCAATTTGGCGAGCGGAAATGAATCGTTGAATGATTTTGAGAAAGGTCTTGATTCTATTGCGGATATCGACTGGAGTTTCGCCGACGACGAGCCTCAAGAACCTGCGGTTGCCTTCTTCAACCAGACTAATATATAA 1008 0.4643 MITGVKSGFEVLRKLQSTWELAGAFQNEVDAAKARDLFAIKLWGESARTNFPPSTYEKELLEMKDMSREECLAAIRKMSNDDKAKRLLSKGLSVYRGVYRIPEQNRWQARVGKGKDTRNLYVGTFETEEEAARAYDIATIRLKGPTAAANLNFDRQSYDIESILKSTKIPIGKGASKMIRKYTADEILLRITNNNNPYPSPSTASSELLYHRNPNIVNTDESVSEVGVAIGDPLFGAEDQRVVNSEAFVYADDNDDRLKIPVDGFSEFAIGVEDNNTESLWNEAYGESLMANLASGNESLNDFEKGLDSIADIDWSFADDEPQEPAVAFFNQTNI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0898 335 SMART rav1_2 13 58 IPR001471 GO:0003700|GO:0006355
Lele05g0898 335 SMART rav1_2 94 160 IPR001471 GO:0003700|GO:0006355
Lele05g0898 335 SUPERFAMILY DNA-binding domain 20 54 IPR016177 GO:0003677
Lele05g0898 335 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 175 - -
Lele05g0898 335 Pfam AP2 domain 93 144 IPR001471 GO:0003700|GO:0006355
Lele05g0898 335 Gene3D AP2/ERF domain 94 155 IPR036955 GO:0003700|GO:0006355
Lele05g0898 335 Gene3D AP2/ERF domain 13 53 IPR036955 GO:0003700|GO:0006355
Lele05g0898 335 CDD AP2 93 154 IPR001471 GO:0003700|GO:0006355
Lele05g0898 335 ProSiteProfiles AP2/ERF domain profile. 94 154 IPR001471 GO:0003700|GO:0006355
Lele05g0898 335 SUPERFAMILY DNA-binding domain 93 153 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0898 Lele-ChrLele05 5539109 5541035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0898 23 186 AP2-EREBP Transcription Factor Family AT1G51190 47.561 6.84e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele05g0898 AP2 8.9e-11 CL0081