Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0895 ATGGAGACCGACGATGGTGATGCCAAGTCAAAGATGGAAGACTATGAAGTTATAGAGCAACTTGGTAGAGGAACACTGGGCATCTCCTTTCTTGTTCTCCATAAGTCTGAGAAAAAGAAGTATGTGCTGAAGAAGATTCGCTTGGCTAAGCAAATCGACAAGTCTAAACGTACAGCTCTGCAAGAGATGAACCTGATTTCAAAACTAAATAACCCATATATCGGGGAGTACAAAGATGCCTGGATGGAAAAGGAGGACTGCATGTGCCTTATAGCTGGCTATTGTGAAGGAGTTAACATGGCTGAGATGATAAAGAGAGCCCGGGGATCTTTTTTCTCTGAGGAGAAAATCTGCAAATGGCTGACTCAATTATTACTTGCCGTGGACTATTTGCATTCTAATCGTGTACTCCATGGAGATCTTAAGTGTTCCAACATATTCCTTTCCAAAGGCAATGACATTCGACTTGGTGACTTTGGTCTTGCAAAACTACTTAAACCAGAAGACCTTGCTTCCTCGGGTGTGGGAACTCCAAACTACACGTGTCCTGAGCTCCTTGAAAATATACCTTATGGTTATAAATCTGATATATGGTCGCTTGGTTGTTGCATGTTTGAAATTGCTGCACATCAACCTGCATTTCGTGCTCCAGACAAAGCCGGGCTTATCCATAAGATAAATAGATCCTCCATTTCTCCACTGCCAATTGTTTATTCGTCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAGAATCCAGAACACAGACCAACAGCACTGGAATTGTTAAGACATCCCCATTTACAACCATACGTCCTCCGCTGTCGGAATGCATCGGCTATCCTTCTTCCTATAAAATCCGAATGTAGCCCAAATAATAAAACAAAAGGATCTTATAGGTCTGGCGATGGCAAAGACCATAGGGACAAAGAAGTAGGGGGATTAACTAATCGATTGGAGACGGTTCATCTATTTGAGGCAAATGGTAATGTACATCAAAGCAGTGTTCCTAAGCGAACAGTTTCATCCAGTGTAGAAGACAACCTTGAGACTAAGATGGTTGATCCCACCAGCTACATTGTGGAATCATGTTCAAGTACTAGTGGCTCAAAAGCTGGCTCTACGACATCTGAATCTACTGTTATTGGTGTGTTCAAGGAAATAGACTTTAAAATTAAACCTGCAAGTGAAACAGTTGATAACGAGGTTACATCAGCAACAATTCCAGAAGATTCTGAGCATGAAGAACTAGGATTGAATGCTGAAACTTTTCAAAAATCAGAAAGGATTGACATAGATACAGTGGCCACAAATGTGAAAGGTATGCTTTCCTATGATGGTTCCACCGAAGCCAAGGGACAGATGGAAGGTACCATACCTGAGGACTCCAAGAAACCAATAATGTCCTGTGCAGGCAGCTATGATGAAGATGGATCCATTGAGGAAACGTTAAAACCACCCCCACCACCCATGCAGCCGGTTAGGGTTAGGGTCGAACAGGACACCAAACCTGAAGGCCTTCACTTGGACTGTTTGTCTTCTGAGAGTAATGATAAACTTGCAGGTAAAGCTGGAGGCCAAGCAAGAACACTTGAGGCCACTTGCTCCATGCATAAAGAGAATGAGACTGCTAGTGAGGTTGATCAAATACCAAGTGGGCTTTCATTAAGCAAACCTACCGCAATCGGTGATGAAACCATGACTGTGCTGGAGAAACCAGGTGAGCAAAGAGCTGATGCTCTGGAGTCTCTGCTTGAATTATGTGCTCAGTTATTTAAGCAGGACAAACTTGATGAGCTTGCTCGTGTGCTTGGACCATTTGGGCATGAAGCTGTTTCATCCAGAGAGACAGCAATATGGTTGACAAAGAGCCTCATATCTGCACAAAAAAAATTTAACACAGAAACCTAG 1914 0.4284 METDDGDAKSKMEDYEVIEQLGRGTLGISFLVLHKSEKKKYVLKKIRLAKQIDKSKRTALQEMNLISKLNNPYIGEYKDAWMEKEDCMCLIAGYCEGVNMAEMIKRARGSFFSEEKICKWLTQLLLAVDYLHSNRVLHGDLKCSNIFLSKGNDIRLGDFGLAKLLKPEDLASSGVGTPNYTCPELLENIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDKAGLIHKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTALELLRHPHLQPYVLRCRNASAILLPIKSECSPNNKTKGSYRSGDGKDHRDKEVGGLTNRLETVHLFEANGNVHQSSVPKRTVSSSVEDNLETKMVDPTSYIVESCSSTSGSKAGSTTSESTVIGVFKEIDFKIKPASETVDNEVTSATIPEDSEHEELGLNAETFQKSERIDIDTVATNVKGMLSYDGSTEAKGQMEGTIPEDSKKPIMSCAGSYDEDGSIEETLKPPPPPMQPVRVRVEQDTKPEGLHLDCLSSESNDKLAGKAGGQARTLEATCSMHKENETASEVDQIPSGLSLSKPTAIGDETMTVLEKPGEQRADALESLLELCAQLFKQDKLDELARVLGPFGHEAVSSRETAIWLTKSLISAQKKFNTET 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0895 637 Gene3D Transferase(Phosphotransferase) domain 1 97 312 - -
Lele05g0895 637 SUPERFAMILY Protein kinase-like (PK-like) 12 298 IPR011009 -
Lele05g0895 637 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 497 - -
Lele05g0895 637 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele05g0895 637 CDD STKc_Nek 14 269 - -
Lele05g0895 637 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele05g0895 637 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele05g0895 637 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Lele05g0895 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0895 Lele-ChrLele05 5519534 5524394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0895 21 270 MAP Kinase Kinase Kinase AT1G53570 31.765 1.02e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lele05g0895 Pkinase 8.5e-61 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0895 05 5519534 5524394 Lele13g1521 13 24478034 24482729 CCT
Lele05g0895 05 5519534 5524394 Lele14g1442 14 22835828 22845776 CCT
Lele05g0895 05 5519534 5524394 Lele15g0905 15 5257321 5262008 CCT
Lele05g0895 05 5519534 5524394 Lele16g0923 16 5224835 5229408 CCT
Lele05g0895 05 5519534 5524394 Lele05g0895 05 5519534 5524394 ECH
Lele05g0895 05 5519534 5524394 Lele07g0934 07 5588083 5592960 hybridization
Lele05g0895 05 5519534 5524394 Lele08g0752 08 4699181 4703939 hybridization