Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0893 ATGGCTGACCCTTACTCTCATCTTTTCTCTTCCCCTCCTTTCTTCCAATTCAACCCTTTCCCTTCTTCTAACCCTTCTTCTCACCACCACCACCATCCCTATGCTCTCCACAACTTCTTCAACCACCCCACCGCTTCCTCCTCCTCCGGTGGCTTTTTCCACCACCATCATGCCGCCTCTTATTCTTCTATTCCTTCACCCCCGTCTCCTCCTCTCAGAGAAGCCCTCCCTCTTCTGAGCCTCAGCCCGTCGACGAAGCTAGAGCAAGATCGTCTTCAAGACTTGGCTGTTAAGGTCGACGACGGGATCATCCTCCACAGCGCTAAACCCAAAGAGGAAGAAGAAAATGAAGAGGAGGACGATGAGGCCACCGTCACTGTTGCACTCCACATAGGGCTGCCCAGCCCTAGCGCGGCTGAGATGGCTTCCGTGCTCTCCTCTTGCAACGATAAAGAACAAAGAGGAGGAGGAGATGGCGGCGGCGGTGACGGCGGTGGAGGTGAAGATCATCATGAGGATTATTGTTCTGGGTCTGGGTTCATGCTCCCCAATAAGCTGAACAAGGGACAGTACTGGATCCCTACTCCATCGCAGATTCTCATTGGTCCAACCCAGTTCTCTTGCCCTGTTTGCTACAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCACTGAGAGGAACACAACCAACGGGAATGCTGAGGCTTCCATGTTATTGTTGCGCACCAGGTTGCAGAAATAACATCGACCACCCAAGAGCGAAGCCACTGAAGGATTTTAGAACACTTCAAACGCATTACAAGAGGAAGCATGGGATAAAGCCGTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCTGTGAGAGGCGATTGGAGAACTCACGAGAAGAACTGTGGCAAGCTCTGGTATTGTATCTGTGGCTCTGATTTCAAGCACAAGAGATCCCTTAAGGATCACATCAAAGCCTTTGGGGTTGGCCATGCTGCTTACGGGATCGATGGGTTTGAAGAAGAAGACGACCCTGCGTCCGAAGTTGAACAAGATAACGAGTCCACCCAGTAA 1104 0.5091 MADPYSHLFSSPPFFQFNPFPSSNPSSHHHHHPYALHNFFNHPTASSSSGGFFHHHHAASYSSIPSPPSPPLREALPLLSLSPSTKLEQDRLQDLAVKVDDGIILHSAKPKEEEENEEEDDEATVTVALHIGLPSPSAAEMASVLSSCNDKEQRGGGDGGGGDGGGGEDHHEDYCSGSGFMLPNKLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGVGHAAYGIDGFEEEDDPASEVEQDNESTQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0893 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 233 IPR013087 -
Lele05g0893 367 SUPERFAMILY beta-beta-alpha zinc fingers 197 228 IPR036236 -
Lele05g0893 367 SUPERFAMILY beta-beta-alpha zinc fingers 272 310 IPR036236 -
Lele05g0893 367 MobiDBLite consensus disorder prediction 141 172 - -
Lele05g0893 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 290 310 IPR013087 -
Lele05g0893 367 SMART c2h2final6 206 228 IPR013087 -
Lele05g0893 367 SMART c2h2final6 290 310 IPR013087 -
Lele05g0893 367 PANTHER ZINC FINGER PROTEIN WIP2 42 364 IPR043584 GO:0003700|GO:0010468
Lele05g0893 367 ProSitePatterns Zinc finger C2H2 type domain signature. 208 228 IPR013087 -
Lele05g0893 367 Gene3D Classic Zinc Finger 268 342 - -
Lele05g0893 367 Gene3D Classic Zinc Finger 205 228 - -
Lele05g0893 367 Coils Coil 356 367 - -
Lele05g0893 367 FunFam zinc finger protein WIP2-like 205 228 - -
Lele05g0893 367 FunFam Zinc finger protein WIP2 259 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0893 Lele-ChrLele05 5501649 5503837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0893 1 367 C2H2 Transcription Factor Family AT3G57670 61.735 9.75e-150 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g0893 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0893 05 5501649 5503837 Lele13g1520 13 24466609 24468842 CCT
Lele05g0893 05 5501649 5503837 Lele14g1440 14 22824655 22826929 CCT
Lele05g0893 05 5501649 5503837 Lele15g0906 15 5272047 5274273 CCT
Lele05g0893 05 5501649 5503837 Lele16g0924 16 5238986 5241226 CCT
Lele05g0893 05 5501649 5503837 Lele05g0893 05 5501649 5503837 ECH
Lele05g0893 05 5501649 5503837 Lele07g0931 07 5569408 5571565 hybridization
Lele05g0893 05 5501649 5503837 Lele08g0749 08 4679608 4681770 hybridization