Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0888 ATGGATTCTTGCAGAAAGTCTCCCTTAAAGCCATGGAAGAAAGGGCCAAGCAGGGGGAAAGGTGGCCCTCAGAATGCCATGTGTGAGTATCGAGGTGTTCGTCAGAGAACGTGGGGAAAATGGGTTGCTGAGATTAGAGAGCCAAAGAAGAGAACCAGGCTGTGGCTTGGCTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAAGCTGCAAGGAGACTCTATGGTCCAGATGCTTACCTTAATCTTCCCCACCTTCAACCTTCCTCCAGTTCCACCATCAAATCTCAAAAGTTCCAATGGTTTCCTTCAAAGAATTTCATTTCAATGTTCCCTTCTTGTGGATTGCTCAACGTTAATGCTCAACCTAGTGTTCATGTAATCCACCAGAAGCTGCAACAACTCAAGCAGAATGGGGTCCCCAGTCACACTCCCTCTAGTTCATCCTTTGATCCAAAGGCTGAAGTTCAGATTATAGGAAGCAAACATAATGCAGACAATCCTCCAAACGAAAAAGAAGCTAAAACATCATCGGAAATTATGTTTAGTGATATTCAGGACAAACCCCAGATTGACCTCCATGAGTTTCTTCAACAGATGGGAGTGCTGAAGGATAAAAAACAGTCAGGAAGTTCCACAAAGTCTGAAGCTTTATCAAATGATTTCAGTGATAATTTTGGAGAGTGTTCTGACAAGAGTGTCAATTGGGAGGAATTAATGGAGATGCATCCAGTTGCAGATAATCAGGGATCAGAGAAAACCCAATTTCAAGTATATGACATAAATGAAGACCTTACTTTCACCACGTCGATCTGGAACTTTTAA 831 0.4296 MDSCRKSPLKPWKKGPSRGKGGPQNAMCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPSSSSTIKSQKFQWFPSKNFISMFPSCGLLNVNAQPSVHVIHQKLQQLKQNGVPSHTPSSSSFDPKAEVQIIGSKHNADNPPNEKEAKTSSEIMFSDIQDKPQIDLHEFLQQMGVLKDKKQSGSSTKSEALSNDFSDNFGECSDKSVNWEELMEMHPVADNQGSEKTQFQVYDINEDLTFTTSIWNF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0888 276 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lele05g0888 276 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Lele05g0888 276 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lele05g0888 276 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Lele05g0888 276 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Lele05g0888 276 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lele05g0888 276 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lele05g0888 276 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Lele05g0888 276 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Lele05g0888 276 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 242 - -
Lele05g0888 276 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0888 Lele-ChrLele05 5461226 5462056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0888 5 276 AP2-EREBP Transcription Factor Family AT3G57600 50.538 4.24e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele05g0888 AP2 1.8e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0888 05 5461226 5462056 Lele13g1515 13 24424849 24425486 CCT
Lele05g0888 05 5461226 5462056 Lele14g1435 14 22790107 22790958 CCT
Lele05g0888 05 5461226 5462056 Lele15g0911 15 5309141 5309773 CCT
Lele05g0888 05 5461226 5462056 Lele16g0930 16 5278056 5278727 CCT
Lele13g1514 13 24418926 24421228 Lele05g0888 05 5461226 5462056 CCT
Lele14g1434 14 22784187 22786301 Lele05g0888 05 5461226 5462056 CCT
Lele15g0912 15 5313615 5315648 Lele05g0888 05 5461226 5462056 CCT
Lele16g0931 16 5282121 5284124 Lele05g0888 05 5461226 5462056 CCT
Lele05g0888 05 5461226 5462056 Lele05g0888 05 5461226 5462056 ECH
Lele05g0888 05 5461226 5462056 Lele07g0927 07 5533202 5534032 hybridization
Lele05g0888 05 5461226 5462056 Lele08g0744 08 4632222 4633049 hybridization