Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0883 ATGGGTTCGAAACTAATGGTCGATGCGCAGAGAACCCCTTTGATGGTTGCTGCCACTTATGGTAGCATTGGTGTCATGAAGCTGATTCTATCACTATCCAACGCTAACATAAATCGCCCTTGTGGCCTTGAGAAGAGCACTGCACTTCATTGTGCTGCATCTGGTGGAGCTGCTAATGCGGTTGATGTTGTAAAACTGCTCTTATCAGCAGGTGCTGATCCAAGTTCCGTGGATGCCAATGGTCACTGTCCAGTTGATGTTATTGTTGTTCCTCCCAAGCTTGATCATGTCAAAAACAGTCTTGAAGAACTTCTTCAAACTGATGACTCCATGTCAGGTTTTAATCTTAGGGTTAACACGGCCAAATCAAAAGCTGAATCTCCACCTTTATCAACTTCACCAGAGAATGAGTCTCCATCTTCTGCACCAGATGTCCACTTGAAGTCGAAGTCAAATAACGCTCCTGTTTCTCATGCACCAGAGAAGAAAGAGTATCCTGTTGATCCATCTCTTCCAGACATCAAGAACAGCATATATGCAGCTGATGAATTCCGAATGTATTCTTTCAAGGTTCGGCCTTGTTCACGTGCTTATTCCCATGATTGGACTGAATGTCCTTTTGTCCATCCCGGAGAAAATGCCAGAAGAAGGGACCCAAGGAAGTTCCACTATAGCTGTGTTCCTTGTCCCGATTTTCGGAAGGGGGCTTGCCGACGTGGTGATATGTGTGAGTATGCACATGGAGTTTTTGAGTGTTGGCTGCATCCAGCCCAGTATCGAACCCGTCTCTGCAAGGATGGGACAAGTTGCTCTAGAAGAGTTTGTTTCTTCGCCCATACTGCCGAGGAGCTTCGTCCTTAG 861 0.4611 MGSKLMVDAQRTPLMVAATYGSIGVMKLILSLSNANINRPCGLEKSTALHCAASGGAANAVDVVKLLLSAGADPSSVDANGHCPVDVIVVPPKLDHVKNSLEELLQTDDSMSGFNLRVNTAKSKAESPPLSTSPENESPSSAPDVHLKSKSNNAPVSHAPEKKEYPVDPSLPDIKNSIYAADEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0883 286 SMART c3hfinal6 223 249 IPR000571 GO:0046872
Lele05g0883 286 SMART c3hfinal6 258 281 IPR000571 GO:0046872
Lele05g0883 286 PANTHER UNKEMPT FAMILY MEMBER 6 286 IPR045234 -
Lele05g0883 286 ProSiteProfiles Ankyrin repeat region circular profile. 44 78 - -
Lele05g0883 286 ProSiteProfiles Zinc finger C3H1-type profile. 228 250 IPR000571 GO:0046872
Lele05g0883 286 SMART ANK_2a 44 76 IPR002110 GO:0005515
Lele05g0883 286 SMART ANK_2a 9 39 IPR002110 GO:0005515
Lele05g0883 286 MobiDBLite consensus disorder prediction 120 156 - -
Lele05g0883 286 FunFam Zinc finger CCCH domain-containing protein 66 181 249 - -
Lele05g0883 286 SUPERFAMILY Ankyrin repeat 10 90 IPR036770 -
Lele05g0883 286 MobiDBLite consensus disorder prediction 120 169 - -
Lele05g0883 286 ProSiteProfiles Ankyrin repeat profile. 44 79 IPR002110 GO:0005515
Lele05g0883 286 Gene3D - 224 286 - -
Lele05g0883 286 Pfam Ankyrin repeats (3 copies) 8 76 IPR002110 GO:0005515
Lele05g0883 286 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 248 IPR000571 GO:0046872
Lele05g0883 286 Gene3D - 4 159 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0883 Lele-ChrLele05 5435775 5436635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0883 6 286 C2H2 Transcription Factor Family AT5G12850 64.184 5.22e-126 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele05g0883 Ank_2 1.8e-08 CL0465