Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0879 ATGCACCATCTAAGCAGAGGTTTGTTTGAATCATTATGATTGGGAATTCTTAGGCTCCTAAAGACATTGCTTGCATTAGCAGGTGAAGAAAAGTATGAAGAACATCAACAAAAGCAATTTGCAGTCCGTACTTTGCCTTCAACAGTAAATGACTTTCTTGCGCCACCTAGACAGTCGGAGCTTGTTGGCCATTCAACAGCATGTGTATCTTACCCTTATCCAGATCCGCATTATGGGGGAGCAATTCCTCCTTATGGGCCTCAACCTTTGTTACATCCTCCTAGTCTTGGAGTGCATTCTTCTAGAATGGTGTTACCACTGCAAATGGAAGAAGAACCTGTGTATGTTAATGCCAAGCAATACCACGGAATTTTGAGGCGTAGGCAATCCCGTGCCAAGGCTGAGCTTAAAAAGAAGGCGATAAAAGTGAGGAAGCCGTATCTTCACGAGTCTCGGCATTTGCATGCCTTGAGAAGAGCAAGAGGGTGTGGAGGCCGTTTTCTGACAACAAAGAAGGTTGATGGTACTGCTGCAAACACAGCAAACAAGAACCAGGATACTGTTAGTTCAGGCCACAAAGGCATTTCTCCCAAGTTGTCTGCCATTGCTGATTCAGATTCTGGTTCCCGAGAAGCCTGGAATTCCCACCAATCAGACATGCGCTCCAGTTCTAATGGCAACAATTATTACACACAAGTTCATGGATTTGAGCTGGCTGGTTATCAATCTCTCTCAAGTGATAAAGGAAACCAAAGCGATTTCTCTGGGGCTCGCAGGGTCTCGCTATACAGAGCATGGTATACTCCTGTAATGTTGATAACAAGGTCCCAAACATTCGGTGGCACAGGTCACCGCAGTTATAGCACAAGAAAGCCGTCAGAGAAGGGGTTTTGGGCCCCACCTGATCCAACACCTGCCAACCCCCCATTGGTTGATGTCACCTGA 945 0.4614 MHHLSRGLFESLXLGILRLLKTLLALAGEEKYEEHQQKQFAVRTLPSTVNDFLAPPRQSELVGHSTACVSYPYPDPHYGGAIPPYGPQPLLHPPSLGVHSSRMVLPLQMEEEPVYVNAKQYHGILRRRQSRAKAELKKKAIKVRKPYLHESRHLHALRRARGCGGRFLTTKKVDGTAANTANKNQDTVSSGHKGISPKLSAIADSDSGSREAWNSHQSDMRSSSNGNNYYTQVHGFELAGYQSLSSDKGNQSDFSGARRVSLYRAWYTPVMLITRSQTFGGTGHRSYSTRKPSEKGFWAPPDPTPANPPLVDVT 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0879 314 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Lele05g0879 314 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Lele05g0879 314 Gene3D - 110 171 - -
Lele05g0879 314 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Lele05g0879 314 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Lele05g0879 314 MobiDBLite consensus disorder prediction 207 226 - -
Lele05g0879 314 MobiDBLite consensus disorder prediction 278 314 - -
Lele05g0879 314 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Lele05g0879 314 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Lele05g0879 314 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 34 228 IPR001289 GO:0003700|GO:0006355
Lele05g0879 314 MobiDBLite consensus disorder prediction 181 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0879 Lele-ChrLele05 5405540 5408305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0879 52 174 CCAAT-HAP2 Transcription Factor Family AT5G12840 60.163 1.00e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele05g0879 CBFB_NFYA 2.8e-25 No_clan