Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0869 ATGTATGTTTCTTTCATTTTTCAGGAACACTATGTTACTTCTTGTTTTTGCCATTTTGAGTTTCAATTCAATGGCTATTTACCCATTTTCGAATACGAAACTGATTATGTGAGATTTGTCCGAGTTATAATTCGTCTTTTGTTCATGATGGGATTTATTAAGACTGATTTTGATCCTCCAATGGGAACTCCCGAATTCCCAGATCTTGGAAGGCATTGCGCTGTTGATGATTGCAAATTGATTGATTTCTTGCCCTTCACATGCGATTGTTGCAATCAGGTATTTTGTTTGGAGCACAGAGGTTATATCAAACATCAGTGTCAGAAAGCTGACAAACTGGATGTCGCTGTTGTCATATGTCCACTTTGTGCAAAAGGAGTCCGCCTAATTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAACACTGAGTGTGACCCATCAAATTATGAGAGAGCCATGAAGAAGAAAAAATGCCCCGCCCCCGGATGCAGAGAGGTCTTGGTGTTCTCAAACACAATCAAATGCAGGGATTGCTTGGTAGATCATTGCCTAAAGCATCGTTTTGGCCCTGATCATAAGTGTCCTGGACCCAAAAGTTTGGAAACAAGCTTTTCATTTATGAATCTCTTAAGCAGAAGTAGAAAGGAAGAGTCAAAGCCAAATCCATCTCCACCTACATCCTCATCAAAATGGGCTTCAGGCTTTCGCAATGTGGCGTCAAATATCCGAGCTTCAGCCGAAGCCAGCATGTCAAAATTAGGTAATGAAATTAACCAAGCGTGGCAAACAGCAAGGGATGGGATGGGACAGAGCAGTGGGAGGGGTAATGAAAATGGGCAAGTGGAGATGGAACAATGTCCTCAGTGTAATGCAAAGTTTTCCTCTGTCACTTCTTTGGTGGATCATGTGCAGAAAGTTCATGAAAGGAGCAGAAACGGATCCAGGGGGGTGGCGAAGTTGACCATCGATGCCTGTCCCAAGTGTGGTAGAGGATTTCGAGATCCAGTGGCTCTTGTAGAGCATGTTGAGAGGGATCACGGTGCGTGCAATTTGAACATGGCAGTCAAGTATATCATTCCTGCTGTAATAGCATCATTTGGAGTTGCATGGATCTGTGACACATCGGTTTCTGATGCAAAGATGTTTGGAGGCACGACCACAAAAACGGTTTCAGATAAGGAGTGGTTCGAGGAGACTGACTACAAATTTCAGGCATGGCCTCGTACTGCTGGTCCCCCTGTGGTTATGAATCCCATATCTCGCCAAAATTTCATCATCAAGTCCCGCTCTTATTCTTAA 1308 0.4335 MYVSFIFQEHYVTSCFCHFEFQFNGYLPIFEYETDYVRFVRVIIRLLFMMGFIKTDFDPPMGTPEFPDLGRHCAVDDCKLIDFLPFTCDCCNQVFCLEHRGYIKHQCQKADKLDVAVVICPLCAKGVRLIPDQDPNITWENHVNTECDPSNYERAMKKKKCPAPGCREVLVFSNTIKCRDCLVDHCLKHRFGPDHKCPGPKSLETSFSFMNLLSRSRKEESKPNPSPPTSSSKWASGFRNVASNIRASAEASMSKLGNEINQAWQTARDGMGQSSGRGNENGQVEMEQCPQCNAKFSSVTSLVDHVQKVHERSRNGSRGVAKLTIDACPKCGRGFRDPVALVEHVERDHGACNLNMAVKYIIPAVIASFGVAWICDTSVSDAKMFGGTTTKTVSDKEWFEETDYKFQAWPRTAGPPVVMNPISRQNFIIKSRSYS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0869 435 ProSitePatterns Zinc finger C2H2 type domain signature. 289 310 IPR013087 -
Lele05g0869 435 SUPERFAMILY AN1-like Zinc finger 153 202 IPR035896 -
Lele05g0869 435 ProSitePatterns Zinc finger C2H2 type domain signature. 328 349 IPR013087 -
Lele05g0869 435 ProSiteProfiles Zinc finger AN1-type profile. 155 205 IPR000058 GO:0008270
Lele05g0869 435 Gene3D - 140 210 IPR035896 -
Lele05g0869 435 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 61 316 - -
Lele05g0869 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 287 315 IPR013087 -
Lele05g0869 435 Pfam Protein of unknown function (DUF1138) 359 430 IPR009515 -
Lele05g0869 435 SMART c2h2final6 326 349 IPR013087 -
Lele05g0869 435 SMART c2h2final6 287 310 IPR013087 -
Lele05g0869 435 Pfam AN1-like Zinc finger 161 200 IPR000058 GO:0008270
Lele05g0869 435 Pfam AN1-like Zinc finger 73 112 IPR000058 GO:0008270
Lele05g0869 435 SMART AN1_Zf_4 73 112 IPR000058 GO:0008270
Lele05g0869 435 SMART AN1_Zf_4 161 202 IPR000058 GO:0008270
Lele05g0869 435 SUPERFAMILY AN1-like Zinc finger 64 112 IPR035896 -
Lele05g0869 435 Gene3D - 61 118 IPR035896 -
Lele05g0869 435 MobiDBLite consensus disorder prediction 223 237 - -
Lele05g0869 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 326 349 IPR013087 -
Lele05g0869 435 ProSiteProfiles Zinc finger AN1-type profile. 67 115 IPR000058 GO:0008270
Lele05g0869 435 Gene3D Classic Zinc Finger 257 353 - -
Lele05g0869 435 Pfam C2H2-type zinc finger 288 310 - -
Lele05g0869 435 MobiDBLite consensus disorder prediction 215 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0869 Lele-ChrLele05 5332273 5340458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0869 61 349 C2H2 Transcription Factor Family AT2G41835 62.457 1.85e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g0869 DUF1138 1e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0869 05 5332273 5340458 Lele05g0869 05 5332273 5340458 ECH
Lele05g0869 05 5332273 5340458 Lele07g0909 07 5396479 5406418 hybridization
Lele05g0869 05 5332273 5340458 Lele08g0724 08 4495288 4499799 hybridization