Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0856 ATGATGATAAGGTTATATGCTAGGCATAATCGAACGGATCAGGCACGTGGATTGTTTTTTGAGATGCAAGAATGGAGTGGTTTGCTCATGATTAGTGCTGTAATTGATTGTTTAAGTCTGTCTGTAGTCACTATTCAGGATATAGTATTGCATTCATCGTATTTTTCTAGGTGCAAGCCTGATGCTGAGACTTACAATGCTCTTATCAGTGCTCATGGGCGAGCAGGACAATGGCGTTGGGCTTTGAATATCATGGAAGACGTGCTTCGTGCAGCTGAGTCATTTAAATGTGGGGCTCAGTATTCAAAAGCTTTCTCTTATTTTGAACTAATGAAGGAAACTAACATTTGTCCGAACACAATTATGCTTAATATTGTGATCCATTGTCTAACAAAGCTTCGACAATATGAGAAAGCTATTGTTATTTTCAATTCCATGAAGGAAAAGAGGTCAGAATGTCACCCTGATGTCGTAACATTCACTTGTATTCCATGTGGGGGCAAGTTGAAAATTGTGAGGCTTGAGCTGATTGATGCCTACGGATTAGGTGGTTTATTAGAACATGCTTTTGAAGTCTTGCGTGAGGTGGAGCGAGATGGAATTCAGCCAAATGTTGTCCCAATATGCACCCTCTTGGCAGCATGTGGACAATGCAATAAGAAGGTGAAGATTGATACGGTGCTTTCAGCAGCTGAGACGCGAGGAATTGAACTGAACACAGTTGCATATAATTCAGCAATTGGAAGCTACATGAGTGTGGGAGAATGTGACAAAGTTGTAGGCTTGTATAATTCTATGAGGAAGAAAAAAGTTAAGCCTTGTTCTGTTACTTCCTCTGTGCTCATTAGTGGCTGTTGCAAGTACCTTGTAAATATGATACTGCTTAATGGAGGTCAACTCACAGAAGTAGAATCTAGATTTGACTTGATAAAAAGGTCTGGTTATTACATTGATGTGTTTACATATACTGCAATGCTTCATGCATACAGTGCTGCAGAGCATGCTAATGTCATGGCTTTTACATCACAGCAGCCTGTGTTTCCTGCCTTCCGCAAGAATTGCATTTTTGAAGGATTGAAGATTGTTTCAGATTCTTTCATGGCTTCCTCTTCCTCTGACCCTAGCAAGTCTGAAGTTGGCTGCTGCGGCGGCGGTAGTGCAGATGTTTCGGATGCAGCGATGGCAAATGATAAGCTCTTGCTCTATAGGGGATTGAAGAAAGCGAAGAAAGAAAGAGGGTGTACAGCTAAAGAGCGCATCAGCAAGATACCTCCTTGTGCTGCGGGGAAACGCAGCTCCATATATCGTGGTGTCACCAGGCATAGATGGACTGGTCGTTATGAGGCCCATCTTTGGGATAAAAGTACATGGAACCAGAATCAGAATAAAAAGGGGAAACAAGGAGCATATGATGACGAGGAGGCCGCAGCTAGAGCTTATGACCTTGCTGCTCTGAAATATTGGGGTCCAGGGACTCTAATCAACTTTCCAGTGACTGATTATACAAGAGATCTTGAAGAAATGCAAAATTTTTCAAGAGAGGAATACCTTGCATCGTTACGGCGGAAGAGCAGTGGTTTTTCTAGAGGAATCTCTAAATATCGTGGACTCTCCAGCTGCCGATGGGAGCCATCATATGGTAGAATGGCTGGATCTGATTACTTCAACAGTATACATTATGGTGATGATTCAGCAGCAGAAAGCGAATATGTTAGTGGTTTCTGCATAGAACGAAAGATTGATTTAACAAATTACATCAAGTGGTGGGGATCCAATAAAAGTCGCCAACCTGATGCTGGAACAAAATCATCAGAAGAAAAAAAGCAAGGATTTGCGGGAGATATTTGTGGTGAGCTCAAAACGCTGGAACAGGAACTCCAACCCACTGAGCCATACCAGATGCCACAGTTAGGCTTGCCCCATGATAGGAAAAAGCATAAAAGTTCTGCAGTCTCTGCCTTAAGTATTTTATCACGGTCAGCAGCATACAAGAGCCTGCAAGAGAAGGCGTCAAAGACACAAGAAAATTACACTGATAATGATGAGGATGAGAACAAAAATACCATCAATAAGTTGGACCATGGCAAGGCACTTGAGAGATCACCAAATCATAATGGTGTGGATGAAAGACTTGACATTGCAATGGGAATGAGCGGGGCATTGTCTATTCAAAGAAATGTTTACCCGTTGACTTCATTCTTGTCTGCACCACTTTTGACAGCCTATAATACTGCAGATCCCATGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCTATACTTCCTGCTGGCCTTTCTCGAACAGCCGAGGTTACCAAGACTGAGAGCAGTCCAACTTACACCATATTTCAGCCGGAGGAGTGA 2364 0.4251 MMIRLYARHNRTDQARGLFFEMQEWSGLLMISAVIDCLSLSVVTIQDIVLHSSYFSRCKPDAETYNALISAHGRAGQWRWALNIMEDVLRAAESFKCGAQYSKAFSYFELMKETNICPNTIMLNIVIHCLTKLRQYEKAIVIFNSMKEKRSECHPDVVTFTCIPCGGKLKIVRLELIDAYGLGGLLEHAFEVLREVERDGIQPNVVPICTLLAACGQCNKKVKIDTVLSAAETRGIELNTVAYNSAIGSYMSVGECDKVVGLYNSMRKKKVKPCSVTSSVLISGCCKYLVNMILLNGGQLTEVESRFDLIKRSGYYIDVFTYTAMLHAYSAAEHANVMAFTSQQPVFPAFRKNCIFEGLKIVSDSFMASSSSDPSKSEVGCCGGGSADVSDAAMANDKLLLYRGLKKAKKERGCTAKERISKIPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNFSREEYLASLRRKSSGFSRGISKYRGLSSCRWEPSYGRMAGSDYFNSIHYGDDSAAESEYVSGFCIERKIDLTNYIKWWGSNKSRQPDAGTKSSEEKKQGFAGDICGELKTLEQELQPTEPYQMPQLGLPHDRKKHKSSAVSALSILSRSAAYKSLQEKASKTQENYTDNDEDENKNTINKLDHGKALERSPNHNGVDERLDIAMGMSGALSIQRNVYPLTSFLSAPLLTAYNTADPMVDPVLWTSLVPILPAGLSRTAEVTKTESSPTYTIFQPEE 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0856 787 MobiDBLite consensus disorder prediction 667 705 - -
Lele05g0856 787 SUPERFAMILY DNA-binding domain 433 498 IPR016177 GO:0003677
Lele05g0856 787 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 385 667 - -
Lele05g0856 787 Pfam PPR repeat 64 88 IPR002885 -
Lele05g0856 787 Pfam PPR repeat 2 24 IPR002885 -
Lele05g0856 787 TIGRFAM PPR: pentatricopeptide repeat domain 64 87 IPR002885 -
Lele05g0856 787 TIGRFAM PPR: pentatricopeptide repeat domain 241 273 IPR002885 -
Lele05g0856 787 TIGRFAM PPR: pentatricopeptide repeat domain 176 205 IPR002885 -
Lele05g0856 787 TIGRFAM PPR: pentatricopeptide repeat domain 122 150 IPR002885 -
Lele05g0856 787 Pfam PPR repeat family 118 162 IPR002885 -
Lele05g0856 787 Pfam PPR repeat family 239 287 IPR002885 -
Lele05g0856 787 SMART rav1_2 434 503 IPR001471 GO:0003700|GO:0006355
Lele05g0856 787 FunFam AP2-like ethylene-responsive transcription factor 433 499 - -
Lele05g0856 787 ProSiteProfiles AP2/ERF domain profile. 434 497 IPR001471 GO:0003700|GO:0006355
Lele05g0856 787 Pfam Pentatricopeptide repeat domain 176 216 IPR002885 -
Lele05g0856 787 MobiDBLite consensus disorder prediction 674 705 - -
Lele05g0856 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 61 91 IPR002885 -
Lele05g0856 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Lele05g0856 787 Gene3D Tetratricopeptide repeat domain 93 230 IPR011990 GO:0005515
Lele05g0856 787 Gene3D Tetratricopeptide repeat domain 1 92 IPR011990 GO:0005515
Lele05g0856 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Lele05g0856 787 Pfam AP2 domain 434 489 IPR001471 GO:0003700|GO:0006355
Lele05g0856 787 Gene3D Tetratricopeptide repeat domain 231 340 IPR011990 GO:0005515
Lele05g0856 787 Gene3D AP2/ERF domain 434 499 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0856 Lele-ChrLele05 5224178 5232756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0856 395 771 AP2-EREBP Transcription Factor Family AT2G41710 65.553 7.00e-156 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele05g0856 AP2 4.9e-09 CL0081