Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0852 ATGTTTGAGGCATGTGAAATACAAGCAGTGTGTTTGCAGATTTCTGAAAGTTGGTGGGTTGCTAGTGTTAGCTCCAGAGATTTTCACTCGTGCAAGATAACCCTTCAGCAGCTTAGCTCATCTTTGCGTTTGCAAATTCTTGAAATTGAAAACACTCCTAATTTGGAAGTTCTTCATTTATCTCTGCTAGAATCATTTCTTATTGTTTTACGTTGCAGTTGTCGGAAGCAGGTTTCAGGGAAAATGGGTAGAGGGAAAATTGAAATTAAGAAGATAGAGAATCTGAATAACAGGCAGGTCACCTTCTCCAAGCGACGTAATGGTTTGCTAAAGAAGGCCAAGGAGTTGTCTGTTCTCTGCGATGCAGAGGTCGCTATCATCATTTTCTCCAGCACCGGCAAGCTTTATGAGTTTTCTAACACAAGCATGGAGCACACACTTTCAAGGTACACCAAAGGCGTGGAATTGGATTATACAGAGCAGCCTTGTGATGGACCACCACCTGAGGAGACTCAGCCTGATACAGACCTTCTAAAGGATGAAATAAGAAAGCTTCGTTTAGCATACTTAAGAATGGCGGGGAAAGAGCTCGATGGGTTGGAATTTAAAGAGCTGCAGAACTTAGAAAATCAACTGAATGAAGGGATACTATCTGTTAAAGAAAAGAAGGAACAAGTACTTCTAGATCAACTTAGGAGGTCCAGATTACAGGAGCAACAAGCCATGCTGGAGAATGAAGCTCTGCGCAAACAAGTTGAGGAGATGCAGAATAAATCAAACACAACACATTTTGTTTATTTCAATACCTTAGAGAGCAAGTTATCCATCAACAATGGTTCCAACCCTATTTTCCATGAAAGAGAAGACCTTTCTGACACTTGCTTGCAGCTAGGGTTGTCAACAGAATTTGGTCGGAAGAGGAAAGAACTGAAAGTAGAACCCCGCAACCACTCAGCCGCCGCTCAACTGGCCTCTGCATCGGAAAACACTCTCTAA 996 0.4227 MFEACEIQAVCLQISESWWVASVSSRDFHSCKITLQQLSSSLRLQILEIENTPNLEVLHLSLLESFLIVLRCSCRKQVSGKMGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAIIIFSSTGKLYEFSNTSMEHTLSRYTKGVELDYTEQPCDGPPPEETQPDTDLLKDEIRKLRLAYLRMAGKELDGLEFKELQNLENQLNEGILSVKEKKEQVLLDQLRRSRLQEQQAMLENEALRKQVEEMQNKSNTTHFVYFNTLESKLSINNGSNPIFHEREDLSDTCLQLGLSTEFGRKRKELKVEPRNHSAAAQLASASENTL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0852 331 CDD MADS_MEF2_like 83 153 IPR033896 GO:0000977|GO:0045944
Lele05g0852 331 PRINTS MADS domain signature 104 119 IPR002100 GO:0003677|GO:0046983
Lele05g0852 331 PRINTS MADS domain signature 119 140 IPR002100 GO:0003677|GO:0046983
Lele05g0852 331 PRINTS MADS domain signature 84 104 IPR002100 GO:0003677|GO:0046983
Lele05g0852 331 SMART madsneu2 82 141 IPR002100 GO:0003677|GO:0046983
Lele05g0852 331 PANTHER SERUM RESPONSE FACTOR HOMOLOG 84 246 - -
Lele05g0852 331 FunFam MADS-box transcription factor MADS-MC 94 162 - -
Lele05g0852 331 Pfam K-box region 171 252 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele05g0852 331 ProSitePatterns MADS-box domain signature. 84 138 IPR002100 GO:0003677|GO:0046983
Lele05g0852 331 MobiDBLite consensus disorder prediction 309 331 - -
Lele05g0852 331 SUPERFAMILY SRF-like 83 160 IPR036879 GO:0003677|GO:0046983
Lele05g0852 331 ProSiteProfiles K-box domain profile. 168 258 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele05g0852 331 Coils Coil 205 225 - -
Lele05g0852 331 Gene3D - 95 155 IPR036879 GO:0003677|GO:0046983
Lele05g0852 331 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 91 138 IPR002100 GO:0003677|GO:0046983
Lele05g0852 331 ProSiteProfiles MADS-box domain profile. 82 142 IPR002100 GO:0003677|GO:0046983
Lele05g0852 331 Coils Coil 231 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0852 Lele-ChrLele05 5200151 5207426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0852 82 307 MADS-box Gene Family AT5G13790 50.000 1.42e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele05g0852 K-box 5.8e-15 No_clan