Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0846 ATGGATCACAAAAGGCAATACAAGGACTCGCTCTCGTACTCTAGTCTTTTCAATCTCGAGCCTTTGATGAATTTTCAACTTCCACAACAAGATGATGATTTTGATTATAATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTGGGGCAATCGCAAATCACATCAATGGGAGTATGCGTGGAAGGGAGGTAAATTTGCTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGACGAAGACAAGGGTAATTTTTGTGGAACGCACATGACTGAGGAGCGATACCGATCAATGCTCGGGGAACATGTTCAAAAATACAAGAGGAGGTATAAAGATACCTCATCTAGTCCTGGCCAAAATCGTGTTAGTGCTCAACTTCTTAAAAGTAACACAGGTTTGAAAGCGCGGAAGTTAGTGAATGAGCATCGAGGAGGAACACATGCTCTGGAGGCTACACCCGAGTGGCCTAATGATATTAATCCTCATAAACCTGTAATCTACCGTGATGCAGAATTCAGACAGCAATATGGACCTGATAGAACTATCTATGAACCGGCTTCTTTAGATATTGGAAATGGCGTTACTTACAAAATTCCTCCTCCTTATGATAAGTTAGCAGCAATGCTGAACCTTCCAAGTTTCTCAGATATTCGAGTTGAGGAGTTTTACTTAAAGGGTACCTTGGATTTGGGATCCTTGGCTGCAATGATGGCTTCTGATAAGAGGGGTGGGACTAGAAACCGAGCAGCCATGGTGGAAGCCTTACCTCAATATGATTCACTTCAGGCACGATTGAAGGCCATGTCAGCTTCCAATTCACCTCATCAATTTAGTCTGAAAGTATCTGATATCGGTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAGCGAACTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTTTAGAGAAAGGTGACACATATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTAAAGAAAGACCCTTCTTTGATTGAGAAGGAGGAAATGGAAAGAATTGGAAAAGTCTGGGCAAATATTGTAAGAAGAGATATACCAAAGCATCATAGGTTTTTTACTGGTTTCCATCGAAAGCAACTTGTTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTCAGAATGAAAATGAGCAGATCACTTAAATTCATGAAAAGTGCACCCATTCGCACCCGAAAACTAGCCAGAGATGTCTTGCTGTTCTGGAAACGAGCAGATAAGGAGATGGCAGAATTGAGGAAAAAAGAGGAGAAAGAAGTTGCAGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGGCTGAATTTCCTTATACAGCAAACTGAGCTATACAGTCACTTTATGCAGAACAAGTCGAACTTACTTTCCTCTGATGCATTACCTACAGTAGATGAAAAAGCAGATGACCAAGATGCAGAACTTGGCTCTTCAGATGCTGGGCCTAGTGGGGAGGAAGATCCTGAAGAGGCTGAACTGAAGAAGGAAGCTATGAAGGCTGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACGAGTGCTTTCGATAGTGAATGCTTGAGGCTGCGTCAGGCTGGGGAAACCGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCCTCAACCATGCCTGTGGCGTCAACAGTTCGGACCCCAGAAATGTTTAGAGGCTCTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGCCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAAGCCATGGCTTTTTTAGCTCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGATCGTTGCACCTGCATCAGTATTGAACAATTGGAATGAAGAACTTGAGCGCTTCTGCCCTGAAATGAAAGCTCTTCCTTACTGGGGTGGGCTTCATGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCGAAATTCCACATTCTCATTACAAGCTACCAGCTACTAGTATCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCTCAGGCAATTAAAAGTGCAAACAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTGCTGCTGACTGGTACACCAATTCAAAATAATATGGCAGAATTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGATAGCCATGAACAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTCTGAATGAGCATCAACTTAACAGACTGCATTCTATTCTAAAGCCTTTCATGCTGCGTCGAGTTAAAAAAGATGTAGTATCCGAACTGACTAAGAAAATAGAGGTTACAGTGCACTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATCAAGAATAAAATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAACGATAAGAGAATTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGGAGTGAGGGAACCACATTCTATAATTTTGCAGAGATTCCAAATTCCCTTCTGCCTCCTCCATTTGGGGAGTCGGAGGATGTATACTATTCTGGGGGTCACAATCCAATATCATACGAGATGCCAAAACTTGTCCATCAAGAAATCATGCGAGGTTCTAAATTGTTCAATTCAACAATTGCTCGTGGTGTTAGCAGAGAACTTTTTCAAAGATATTTTAATATTTATAGCCCAGAGAATGTTTTTCAATCTATCTTCTCTGAAGGGAATAAATCAAATGCACCATTTATTAAAAGTGGAACTTTTGGCTTTACCCATTTGATGGATTTGTCCCCGCAAGAAGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAATTACTGTTTTCTATGGTGAGATGGGAACAGAAATTGATCAATGAAGTTGTGGACTTCGTAACGGAGACTATAGATAATGATCCTGAATACAGTTACCTTGAAAGAGGAAAAGTGAGGGCTGTCACACGAATGTTATTGGTGCCTACAAAATCTGAGACAAAACTTTTTCAAAGAAGATTTGCTACTGGCCCCAGCCATGCCCCTTTTGAGGCCTTAGTTGTCCCATATCAGGATAGGATTATATCCAATGCAAGACTTGTTCACTCAGCATTCACATATATCCCTCGGACTAGAGCTCCCCCAATTGTTGCCCACTGCTCAGACCGAAGCTTCTCTTATAAAACACTGGAAGAGTTGCATGACCCTTGGGTTAAGAGGTTGCTTGTGGGATTTGCACGTACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTCTGACCTAGAAAGCCAGCCTGCTCTTCAGTTAACCTACAAAATTTTCGGTTCATCTCCCCCTATGCAAAATTTTGACCCAGCGAAATTGCTCACTGACTCTGGGAAGCTTCAAACGCTTGACATATTATTAAAACGCTTGCGGGCTGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTCTTGAGGACTACATGAACTATAGAAAATATAGATATTTTAGACTTGATGGATCATCATCTATTCAGGACCGCAGAGACATGGTTAGAGACTTCCAGCAAAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACGGCTGCTGACACAGTAATCTTTTATGAGAATGATTGGAATCCCACATTGGATCAGCAGGCAATGGATAGAGCTCATAGATTGGGGCAAACTAGAGATGTTACTGTTTACAGACTTATATGCAAAGAGACAGTTGAAGAGAAGATACTTCTTAGAGCAAGTCAAAAAAGCACTGTACAAAACCTCGTCATGACTGGTGGTTCTACTGATGATATTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTGCAGTTGGAGCAGAAATTCAAGGAAATTCCTCTTCAGGCAAAGGATAAGCAAAAGAGGAAACAAACTGTGAAGGGTATACGGGTAAATGAAGATGGTGATGCGTCTCTGGAAGATCTAACAGACTCTGGAGCACAGGGCCCAGATAATGATATTTCTCTTGACCCAGAGGGATCAAAGCCCAGTAATAAAAAGAGAAAAGCTGCCTCTGAGAAGCAAACGGCATCAAGGGCAAGGAATTTTCAAAAGACGAATGAGTTGAATAGTGCAACGGCTATGAACTATGAGTTGTATGATGCTACTCAAAATACTGATCCAGTTGTCCACAAACCCAAGCGACCAAAGAAGGCAAAGAAGGTTGGGAATGATAAGTTTAACGACTCTTTTACTGGTACAGTAAATATATTCCCAGAGCAGATCCAATAG 4560 0.4145 MDHKRQYKDSLSYSSLFNLEPLMNFQLPQQDDDFDYNGNSSQDESRDSQGGAIANHINGSMRGREVNLLKKRKWSQNSDDEDKGNFCGTHMTEERYRSMLGEHVQKYKRRYKDTSSSPGQNRVSAQLLKSNTGLKARKLVNEHRGGTHALEATPEWPNDINPHKPVIYRDAEFRQQYGPDRTIYEPASLDIGNGVTYKIPPPYDKLAAMLNLPSFSDIRVEEFYLKGTLDLGSLAAMMASDKRGGTRNRAAMVEALPQYDSLQARLKAMSASNSPHQFSLKVSDIGLNSSIPEGAAGNIKRTILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPSLIEKEEMERIGKVWANIVRRDIPKHHRFFTGFHRKQLVDAKRFSENCQREVRMKMSRSLKFMKSAPIRTRKLARDVLLFWKRADKEMAELRKKEEKEVAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDALPTVDEKADDQDAELGSSDAGPSGEEDPEEAELKKEAMKAAQEAVSKQRKLTSAFDSECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVASTVRTPEMFRGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPEMKALPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTKKIEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNDKRILNLMNIVIQLRKVCNHPELFERSEGTTFYNFAEIPNSLLPPPFGESEDVYYSGGHNPISYEMPKLVHQEIMRGSKLFNSTIARGVSRELFQRYFNIYSPENVFQSIFSEGNKSNAPFIKSGTFGFTHLMDLSPQEVMFSATGSFMEQLLFSMVRWEQKLINEVVDFVTETIDNDPEYSYLERGKVRAVTRMLLVPTKSETKLFQRRFATGPSHAPFEALVVPYQDRIISNARLVHSAFTYIPRTRAPPIVAHCSDRSFSYKTLEELHDPWVKRLLVGFARTSEFNGPRKPDGPPHHLIQEIDSDLESQPALQLTYKIFGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSSIQDRRDMVRDFQQRNDVFVFLLSTRAGGLGINLTAADTVIFYENDWNPTLDQQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSTDDILAPEDVVSLLLDDVQLEQKFKEIPLQAKDKQKRKQTVKGIRVNEDGDASLEDLTDSGAQGPDNDISLDPEGSKPSNKKRKAASEKQTASRARNFQKTNELNSATAMNYELYDATQNTDPVVHKPKRPKKAKKVGNDKFNDSFTGTVNIFPEQIQ 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0846 1519 MobiDBLite consensus disorder prediction 1479 1502 - -
Lele05g0846 1519 Pfam DNA-binding domain 350 479 IPR020838 GO:0003677
Lele05g0846 1519 Pfam Helicase conserved C-terminal domain 1213 1322 IPR001650 -
Lele05g0846 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 818 IPR027417 -
Lele05g0846 1519 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Lele05g0846 1519 MobiDBLite consensus disorder prediction 1393 1461 - -
Lele05g0846 1519 MobiDBLite consensus disorder prediction 491 526 - -
Lele05g0846 1519 SMART ultradead3 586 781 IPR014001 -
Lele05g0846 1519 Coils Coil 515 535 - -
Lele05g0846 1519 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Lele05g0846 1519 MobiDBLite consensus disorder prediction 28 55 - -
Lele05g0846 1519 SMART helicmild6 1239 1322 IPR001650 -
Lele05g0846 1519 MobiDBLite consensus disorder prediction 28 60 - -
Lele05g0846 1519 Gene3D - 1179 1421 IPR027417 -
Lele05g0846 1519 Coils Coil 427 466 - -
Lele05g0846 1519 PANTHER HELICASE SRCAP-RELATED 90 532 - -
Lele05g0846 1519 CDD SF2_C_SNF 1201 1333 - -
Lele05g0846 1519 FunFam DNA helicase INO80-like protein 1181 1431 - -
Lele05g0846 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1362 IPR027417 -
Lele05g0846 1519 Gene3D - 828 899 IPR027417 -
Lele05g0846 1519 FunFam Putative DNA helicase INO80 562 840 - -
Lele05g0846 1519 MobiDBLite consensus disorder prediction 1436 1451 - -
Lele05g0846 1519 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1213 1366 IPR001650 -
Lele05g0846 1519 MobiDBLite consensus disorder prediction 512 526 - -
Lele05g0846 1519 MobiDBLite consensus disorder prediction 1393 1413 - -
Lele05g0846 1519 Pfam SNF2-related domain 605 892 IPR000330 GO:0005524|GO:0140658
Lele05g0846 1519 Gene3D - 586 827 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0846 Lele-ChrLele05 5164112 5174006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0846 611 892 RAD5 or RAD16-like Gene Family AT5G43530 29.358 3.59e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele05g0846 SNF2_N 4.4e-67 CL0023