Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0836 ATGCCACTGGAATTTCTTTGTAACTGCGAGATTATCGTTGAGTCCAAAAGTTTCACCTTTGTGAAAGGCAAAGTTACGAATAAAGGAAATGATTCTGAGAATGTTGAGTTCGAAGATAGAGATCATCAATTCGTCCTTCTTAATCCTAAAGATGCTGATGGCACTAGCAAATCCTACCTGCAGTTGTTTGACCGTGGCTATGGTGCTAGTTCATTAATCATGTTGACCCTAATTGACTTTGTCTCTTTTTGGGGAAAGTTATTTACCCTCGTGCCTCAAGATTATATACATGTCGCAAATAAGTTGAAAGGTGCAAGAAACTTCCATTTATCGATTGCTTATGCCTCCAGGAAATATCGTACACTGCTTCTGAAATCTGTTTCTGTTGGAAATTCTGGAAAGGTTATAGCTGCCATTACACATCAAATAGTCCCTGCAGATACAGAGTATGCAGAGATCCCACTTGCAGCCGTTAGTGCAATCTATCAACGCAAGACGGAATCTGAAGTGTTTTGGCTTAAACAGGGTTTCATATCAATAGCAGAGGTGGACACCAAAGGTAGGGCTCGCAGGTTACCTGTAAAAGCTGATATTCGTAAAGCATTATGCTTTCCTGGCGGACATTTACACATTGATTTGAACTTTTCAAATAACTCCACTGATAGAACAGATAATATGGAGACTGGTGATCCTAAGGCTTTGATGATGACACACAACCCACTGTTGCAGGACTTGCCAACGATGGAGTTGATGCTAGAACAAAGGATTGTTCTAATTGCACAAAAGGCTGATAGGACTAATTCTTGTTTTGTGGGATGCTCATGGGGCGTTTCAAGTGGAAAAGGTTCAGTGGAGCTTCCATGTGGTGATTCTTTCATTGTCCAAGAAAAGAATTCTGAGAAACTCAAAGGGGATTATCTACATTTAGAAGCTCAAGTAATTGAATCCCTTGGGGCCACTGTTACATCTGAAGGAAGCATGACCACATATGTTGTCACAGGTAAAGTGAGGAAAACTTTGAATTTCTGCACTGACCTCTGCTCAGGGACTTGGGTGGTCTCATCAGATTGGTTAAAAGAAAGCTATCGTGAAGGCAAATTTGTTGATGAGTTGGCTTACATAGGGTACAATGTGTGTATTGCAGATCATGTTCAACCTCCTGCTAAAACACTATCTGCAATTGTGAGCTCTGGTGGTGGCAATGTTATTTGTGGGTTGAAGAAAGTAAATGAAGCATCCTCAACTATTTTTGTAACGTGTGAAGAAGATATGGAAGAAGCAATGGTAACTGCAAAGCAGGGGATCAGAACTTTCAGTAGTGAGTGGTTTATTAACTGTGTTATGGGGCACGAACTCGATATGGAGGCCTTTCAATTTGCAGAGTCCTTATGA 1392 0.408 MPLEFLCNCEIIVESKSFTFVKGKVTNKGNDSENVEFEDRDHQFVLLNPKDADGTSKSYLQLFDRGYGASSLIMLTLIDFVSFWGKLFTLVPQDYIHVANKLKGARNFHLSIAYASRKYRTLLLKSVSVGNSGKVIAAITHQIVPADTEYAEIPLAAVSAIYQRKTESEVFWLKQGFISIAEVDTKGRARRLPVKADIRKALCFPGGHLHIDLNFSNNSTDRTDNMETGDPKALMMTHNPLLQDLPTMELMLEQRIVLIAQKADRTNSCFVGCSWGVSSGKGSVELPCGDSFIVQEKNSEKLKGDYLHLEAQVIESLGATVTSEGSMTTYVVTGKVRKTLNFCTDLCSGTWVVSSDWLKESYREGKFVDELAYIGYNVCIADHVQPPAKTLSAIVSSGGGNVICGLKKVNEASSTIFVTCEEDMEEAMVTAKQGIRTFSSEWFINCVMGHELDMEAFQFAESL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0836 463 SUPERFAMILY BRCT domain 307 373 IPR036420 -
Lele05g0836 463 Gene3D BRCT domain 300 375 IPR036420 -
Lele05g0836 463 CDD BRCT_PAXIP1_rpt6_like 375 453 - -
Lele05g0836 463 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 375 458 - -
Lele05g0836 463 Gene3D BRCT domain 376 462 IPR036420 -
Lele05g0836 463 ProSiteProfiles BRCT domain profile. 312 375 IPR001357 -
Lele05g0836 463 CDD BRCT_MDC1_rpt1 314 368 - -
Lele05g0836 463 SUPERFAMILY BRCT domain 375 451 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0836 Lele-ChrLele05 5097045 5102924 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0836 05 5097045 5102924 Lele05g0836 05 5097045 5102924 ECH
Lele05g0836 05 5097045 5102924 Lele07g0876 07 5159061 5164327 hybridization
Lele05g0836 05 5097045 5102924 Lele08g0683 08 4209442 4214672 hybridization