Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0805 ATGTCTTCGGAGGACTCTCTAAGATCTCTATCCATGGACTATCTCAACCTGCTCATCAATGGTCAAGCCTTCAGCGATGTCACTTTCAGCGTGGAGGGTCGTCTGGTCCACGCGCATCGCTGCATCCTGGCGGCTCGAAGCCTCTTCTTCAGGAAATTCTTCTGCGGCTCATCAGACACACCGTCCGGGCTGGACCCGGCGTCAGGCTCGCGGGTCAACTCAGCCACGTCTCCGTCGAGACCCGGGGTTATCTCGGTGGACTCGGTGGGCTATGAAGTGTTTCTGCTTCTGCTTCAGTTCTTGTACAGTGGCCAAGTCTCTATTGTGCCTCAGAAGCACGAGCCGAGGCCTAATTGCGGCGAAAGGGGCTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTTCATACTCTCGCCGCCGCTAGATCTTTTGGCGTCGAGCAGCTCGCATTGCTCACTCAGAAACAATTAGCCAGCATGGTAGAGAAGGCCTCCATTGAAGATGTGATGAAGGTGCTTCTCGCTTCAAGAAAGCAAGACATGCACCAACTTTGGAGTACTTGTTCACACCTCGTTGCCAAGTCCGGTCTCCCTCCTGAAGTCCTCGCCAAACACCTTCCCATCGATGTTGTCGCTAAAATCGAGGAGCTTCGTCTCAAAACCTCCCTCGTTCGTCGCTCCCTAATCCCCCACCACCATCACGACCATATAAGCACCACCGCAGATCTCGAGGACCAGAAAATTCGCAGAATGAGAAGGGCACTCGACTCCTCCGATGTTGAACTCGTCAAGCTCATGGTCATGGGAGAAGGCTTAAATCTAGACGAAGCATTGGCCTTACACTACGCCGTAGAGAATTGCAGCCGTGAAGTCGTTAAGGCCTTGCTGGAGCTCGGTGCAGCCGATGTCAACTACCCCGTCGGACCCGCCGGCAAGACCCCACTTCACCTTGCCGCCGAGATGGTGTCACCGGACATGGTGGCGGTCCTCCTCGACCACCACGCCGACCCGAACGTACGAACCGTGGATGGAGTAACCCCTCTTGACATCCTGAGAACCCTAACTTCCGATTTTCTGTTCAAAGGAGCCGTCCCTGGGCTCGGCCATATTGAACCAAACAAATTGAGGTTGTGTTTGGAGCTGGTTCAGTCGGCAGCTCTTGTGCTGTCACGCGAAGAAGGCAATGATAATCCTCCTTCTTCAACGACCATTTATCCGCCAATGAACGAAGACCATAACATCAGTAGTAGCAACAGCAATATCGGGAACCTTAATCTGGACGCAAGGCTGGTTTACCTGAATCTGGGTGCGACGTCGTCGTCGGGACAAATGGGTTCGAGATTGGACGGCGACGAAGATAGCAGACACACCAATAGCCAGAACCGTCATGGTTTGCAAGGTGGATCATGTAACCCAACAATGTACCACCATTCTCATGACTATAATTAA 1455 0.5361 MSSEDSLRSLSMDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGSSDTPSGLDPASGSRVNSATSPSRPGVISVDSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALHTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKTSLVRRSLIPHHHHDHISTTADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPVGPAGKTPLHLAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLGHIEPNKLRLCLELVQSAALVLSREEGNDNPPSSTTIYPPMNEDHNISSSNSNIGNLNLDARLVYLNLGATSSSGQMGSRLDGDEDSRHTNSQNRHGLQGGSCNPTMYHHSHDYN 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0805 484 MobiDBLite consensus disorder prediction 462 478 - -
Lele05g0805 484 ProSiteProfiles Ankyrin repeat profile. 312 344 IPR002110 GO:0005515
Lele05g0805 484 ProSiteProfiles Ankyrin repeat region circular profile. 312 342 - -
Lele05g0805 484 SMART BTB_4 25 163 IPR000210 GO:0005515
Lele05g0805 484 Pfam Ankyrin repeats (3 copies) 260 342 IPR002110 GO:0005515
Lele05g0805 484 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Lele05g0805 484 CDD BTB_POZ_NPR_plant 8 163 - -
Lele05g0805 484 SUPERFAMILY Ankyrin repeat 271 355 IPR036770 -
Lele05g0805 484 FunFam regulatory protein NPR5 isoform X1 4 196 - -
Lele05g0805 484 Pfam Domain of unknown function (DUF3420) 198 254 IPR024228 -
Lele05g0805 484 ProSiteProfiles BTB domain profile. 25 110 IPR000210 GO:0005515
Lele05g0805 484 MobiDBLite consensus disorder prediction 393 418 - -
Lele05g0805 484 MobiDBLite consensus disorder prediction 396 418 - -
Lele05g0805 484 MobiDBLite consensus disorder prediction 61 80 - -
Lele05g0805 484 MobiDBLite consensus disorder prediction 442 484 - -
Lele05g0805 484 FunFam regulatory protein NPR5 isoform X2 243 360 - -
Lele05g0805 484 Gene3D Potassium Channel Kv1.1; Chain A 3 196 IPR011333 -
Lele05g0805 484 SUPERFAMILY POZ domain 9 161 IPR011333 -
Lele05g0805 484 Gene3D - 244 360 IPR036770 -
Lele05g0805 484 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 483 IPR044284 GO:0099402
Lele05g0805 484 SMART ANK_2a 312 341 IPR002110 GO:0005515
Lele05g0805 484 SMART ANK_2a 277 307 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0805 Lele-ChrLele05 4832373 4834670 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele05g0805 BTB 1.4e-14 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0805 05 4832373 4834670 Lele13g1457 13 24067931 24070228 CCT
Lele05g0805 05 4832373 4834670 Lele14g1382 14 22465867 22468163 CCT
Lele05g0805 05 4832373 4834670 Lele15g0969 15 5659467 5661752 CCT
Lele05g0805 05 4832373 4834670 Lele16g0991 16 5601009 5603323 CCT
Lele05g0805 05 4832373 4834670 Lele05g0805 05 4832373 4834670 ECH
Lele05g0805 05 4832373 4834670 Lele07g0845 07 4894534 4896663 hybridization
Lele05g0805 05 4832373 4834670 Lele08g0652 08 3970143 3972708 hybridization