Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0797 ATGGACAACTCTGAGCTCTACCAGTTCCTCGCCGGCAACGGCGCTTCCTTCTTCTCACTCGCATCGTACGGCATACCTCCTGCTGCAGCCTCCACAATGCACAGTTTCTGCAGCTCCTCTTATTACCCCTTGGATTCTTCCGAAATTACCGATACACCCCAGCAAGATAGAGCCCTCGCCGCTCTGAAGAATCACAAGGAGGCTGAGAAGCGCCGGAGAGAGAGGATCAATTCTCACCTCGATAAGCTTCGCACTCTTCTTCCCTGTAATTCTAAGACTGACAAGGCGTCGCTCCTAGCAAAGGTTGTCCAACGAGTGAGGGAGCTGAAACAGCAAACTTCACAAATCCCCGAACTCGAAACCATTCCTTCAGAAACAGACGAAATCACCGTCCTGTCCACTAGCGGAGACTACGACGGAGACGGCAGGCTCATATTCAAAGCCTCTCTATGCTGCGAAGATCGCTCCGACCTCATACCCGATCTCATCGAAATCCTAAAGTCGCTGCATCTCAAAACCCTCAAAGCAGAAATGGCAACAATAGGAGGAAGAACCCGAAACGTCCTCATTGTGGCCGCCGACAAAGACCACAGCATCGAATCAATCCACTTCCTCCAGAACGCATTGAAATCTCTGCTCGAACGCTCCAACTCAAGCGAAAGATCCAAACGGCGCCGTGTACTCGACCGCAAATTGATTGTCTGA 705 0.5135 MDNSELYQFLAGNGASFFSLASYGIPPAAASTMHSFCSSSYYPLDSSEITDTPQQDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVRELKQQTSQIPELETIPSETDEITVLSTSGDYDGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATIGGRTRNVLIVAADKDHSIESIHFLQNALKSLLERSNSSERSKRRRVLDRKLIV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0797 234 SMART finulus 66 115 IPR011598 GO:0046983
Lele05g0797 234 CDD bHLH_AtAIG1_like 55 131 - -
Lele05g0797 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 119 IPR036638 GO:0046983
Lele05g0797 234 CDD ACT_UUR-ACR-like 149 213 - -
Lele05g0797 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Lele05g0797 234 FunFam transcription factor bHLH30 55 118 - -
Lele05g0797 234 Gene3D - 55 121 IPR036638 GO:0046983
Lele05g0797 234 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Lele05g0797 234 PANTHER TRANSCRIPTION FACTOR BHLH30 48 229 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0797 Lele-ChrLele05 4749987 4751434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0797 6 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 66.667 5.45e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele05g0797 HLH 2e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0797 05 4749987 4751434 Lele05g0797 05 4749987 4751434 ECH
Lele05g0797 05 4749987 4751434 Lele07g0837 07 4806742 4811893 hybridization
Lele05g0797 05 4749987 4751434 Lele08g0644 08 3894201 3895689 hybridization