Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0792 ATGAAGTCCCGGTCCTTAGATTACTGGAGGAGTTACTTTCGAACGGCGAACTCGGATATATTTCATATTATCGACCATGCGATCATGGTGGCCGCTTCTGATTGTCCGAAGGAGTTTCGATCGCGAAGAGATGGAATCGCGGAACGGTTGTTTTTTGGTCGGATGACTCGTTGTTTGGGTTGTGAGCGAGTGGCGGTGTGCTATGTTAACGAGGAATACGACGGAGGTTGCAAGAGTGGTTTTGATAGAGACGGAGCTGAAGTGGAAGCAGGTGCAAGTAGAGAGAGCAAGGCCCATAGTAGCAGAGATGACCTTGGAGAGATGAACATGAACCACGTTAGCAATTATAGCTACGGAGATGCTGAAGCATTGACGGATGAGATTGAAGAAGAGTCTCAATTGGTTGGTGAGATTTTGAGGATCAAGGAAATTCTTCATAACAGCGAAGAAGGGTCTGAATCGGAATTATTTGAGTCGTTGAGGAGGCTCCAGCTGATGGAACTGAGTGTGGATCTTCTAAAGGCGACTGAGATTGGAAAGGCCGTCAATCCTTTCCGAAAGCATGGATCAAAGGAGATTCGTCAACTTGCAAGGACTCTTATTGATGGCTGGAAGGAAATGGTAGATGAGTGGGTCAATGCTACTACCGCAACCAATGCAGGTTATGAAGGTACCCCAGATTCAGTAAATACATCTGTTGATGAAGAGGAAGAAGAAGGGCTTCCATCACCTCCTATGGATGAAGGGGCTTTCTTTGCAGCTCAAACCACGTCAATGGAGTTATCGCAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACAGAGTGGGGAATTCATCAAGAACCGGGAAAATAGCAGAAGACCAGCTCTGGACAATCAAAACATAGTAAAGAGGAAACAACAGGCTTCTGTTGGGGTGGACACCATGATCAAAGGCAGCAAGAGTCAGCAAGCGAAGAAAAATGAGGCTGTTGCGAAGCTAATCAAATCAGCAACTGTTGGTTCTGGTCCTGGCAGACCATTGAAATCAAGCATGCAACAGAGAGAGAATATGGAGCCAAGGATGTTGCAAAAGATGGACAGGAGTGGTGTCCCCAGGAGGCCTCTTGCTGGTCCGCAAGATAAGTCGAAGGGCTCGGATGATGCTTCAGTCCAAATGAAGCTAGTAGCCACTAAGAGGAAGCTTCAGGAGAGTTATCAACAAGCTGAGAATGCCAAGAAGCAGAGAACAATCCAGGTGATGGAGTTGCGTGATCTCCCCAAGCAAGGAGGGATTAGCCACAGAAACACGCATTTCAAACCTATGAAGAACCAAAACAGGAATTGGGCTCAGGGACGAAGGCGGCTGATGCTGGCAGAATATGATAACATTGAGGGGATATATGAGTGGGTTAAAACAGATTTGGGAATAGGCATATATGTAATAGGGTAG 1437 0.4656 MKSRSLDYWRSYFRTANSDIFHIIDHAIMVAASDCPKEFRSRRDGIAERLFFGRMTRCLGCERVAVCYVNEEYDGGCKSGFDRDGAEVEAGASRESKAHSSRDDLGEMNMNHVSNYSYGDAEALTDEIEEESQLVGEILRIKEILHNSEEGSESELFESLRRLQLMELSVDLLKATEIGKAVNPFRKHGSKEIRQLARTLIDGWKEMVDEWVNATTATNAGYEGTPDSVNTSVDEEEEEGLPSPPMDEGAFFAAQTTSMELSQFFDGMDDDGNPRQSGEFIKNRENSRRPALDNQNIVKRKQQASVGVDTMIKGSKSQQAKKNEAVAKLIKSATVGSGPGRPLKSSMQQRENMEPRMLQKMDRSGVPRRPLAGPQDKSKGSDDASVQMKLVATKRKLQESYQQAENAKKQRTIQVMELRDLPKQGGISHRNTHFKPMKNQNRNWAQGRRRLMLAEYDNIEGIYEWVKTDLGIGIYVIG 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0792 478 MobiDBLite consensus disorder prediction 331 385 - -
Lele05g0792 478 MobiDBLite consensus disorder prediction 290 304 - -
Lele05g0792 478 Coils Coil 387 414 - -
Lele05g0792 478 MobiDBLite consensus disorder prediction 218 245 - -
Lele05g0792 478 MobiDBLite consensus disorder prediction 339 353 - -
Lele05g0792 478 SMART TFS2_5 135 210 IPR003617 GO:0005634
Lele05g0792 478 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 221 IPR035441 -
Lele05g0792 478 ProSiteProfiles TFIIS N-terminal domain profile. 136 211 IPR017923 -
Lele05g0792 478 MobiDBLite consensus disorder prediction 272 289 - -
Lele05g0792 478 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 436 IPR044805 -
Lele05g0792 478 MobiDBLite consensus disorder prediction 269 304 - -
Lele05g0792 478 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 134 220 IPR035441 -
Lele05g0792 478 CDD TFIIS_I 137 209 - -
Lele05g0792 478 Pfam TFIIS helical bundle-like domain 160 208 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0792 Lele-ChrLele05 4707832 4710965 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lele05g0792 Med26 9.1e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0792 05 4707832 4710965 Lele05g0792 05 4707832 4710965 ECH
Lele05g0792 05 4707832 4710965 Lele07g0832 07 4776107 4778705 hybridization
Lele05g0792 05 4707832 4710965 Lele08g0636 08 3840577 3843208 hybridization