Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0790 ATGCGAAATCTGGTTTCGCCGCGCTTCTCTGGGATTTGTGATGCAGTCGTCGAGGGAGGTAAGGAGAAAAAGAAGAATCCAGCGGCAGAAGGAAGAAACCGCAGAGCACTAGGCGACATTGGGAATTTGGTGAATGTAAAAGAAGTAGAGGTCAAGCCTAACCGCCCCATCACGAGGTCTCTCTCTCGCTCTCTGTATGATTATCTTTTAATGGTGATTGCAGTCTTGATTCTTAACCTCATTTTATCTTCTTGCCGTTCTTTTAGGAGTTTCTGTGCCCAATTACTTGCCAATGGGGCTGCAGCAGCTGCCGAAAACAACAAGAAACAAGTTTGTGCTACGGTGGATGCACCTCTTCCTGTCGTTGATGGAGTTGTAGCTGCTAAGAGAGTCGCACCAAAGCCGGCTCAGAGGAAAGTCACCGTTAAACCAAAGCCAGAGGAAGTTATTGACATAAGCTCAGAAGAAGAGGTTGAGAAAGAAAAGAAGTCTGCGACCAAGAAAAAGGAAGGAGATGCAAACTCTAAGAAGAAATCACGCACTCTCACTTCAGTACTTACTGCTCGAAGCAAGGTAGCATGTGGTCTCACTAAGAAGCCAAAGGAGCAGATTGTTGATATTGACGCAGCTGACACTGAAAATGAACTAGCTGCTGTTGAATACATAGATGAAATCTACAAGTTTTACAAGCTGGTCGAGCATGAGAATCGCCCTCACGATTACATGGACTCGCAACCTGAACTGAATGAGAGGATGAGAGCTATATTGGTGGATTGGCTGATAGATGTTCAAGGAAAGTTCGACCTCTCACTTGAGGCTCTTTATCTGACCATCAATATAATTGATCGCTTCCTTGCCGTGAAGACGGTTCCAAGGAGGGAACTCCAATTGGTTGGTATCAGTGCCATGCTCTTGGCATCTAAGTATGAAGAAATCTGGCCACCTGAGGTTAATGACTTTGTATGCCTCTCAGACAGAGCTTACACTCATGAACAGATATTAGTGATGGAGAAAACCTTACTTAACAAGCTGGAATGGACTTTGACTGTGCCCACCACTTACGTTTTCCTTGTTCGTTTCATCAAGGCTTCGATTCCTGATGAGAAGTTAGAAAACATGGCGTATTTTCTTTCTGAGTTGGGATCCATGCATTATGCCACCATAATGTATTGCCCATCAATGGTTGCTGCCTCAGCAGTCCTTGCAGCTCGCTGTACTTTAAACAAGAACCCTACTTGGAATGACACACTAAATCTTCACACTGGATACTCAGAAGCACAACTTATGGATTGTGCTAGATTGCTGGCGAGCTTCCATTCCATGGCTGGGAACGGAAAGCTTCAGGGGAAAAAGCATGTCAAGACGCAGTCGAGGCTATCCACTTCTGAAGTGGCCTCTCCTCGTACACCATCACTGACTCCTAACAGAGATTCAGATGCGAGTGAAGAAGCTTCAAAAATATTCCCGTCTTTCATTGGCAAATCTGCTTTTGTTGGCGATATCAGTGCCGTGAAGCTGAAATCCAAAGGCTGTAAAATTTGGCTTTCTGAGCCTTCCATGGTGTCAATTGCATCTTCAAGAAAGAAAAATCTTGATTCAGATAGCTTTCCTCTTAAATCACTAACAAAAGAATGTGCCCGATGCCATGGACTGGATGCTAGGAACACTTCAAATGATGGCGCAGTAAACTACTTTGCTGTCGCAACTGTCTTTCCTTCTAGCAAGAATCAATGCCTATCTTCTCTTGTAAATGAGAAAAATCAACCACATTCTACAGAAGATAATAGCCTGTTGGCGTATGAGTGCAAGGAATTGTATCTTCAGTTGGCTCCTTTGAAGAATGGATTACCCATGAAAATCAGTAACTCATCACCAATGGACTTTTCTGCAGCAAAATCCCATCATCAATTTGGGAATGAAAATGTTGCTTCTCCTACAACACCTAATGGATTGAAATTGTCTAGTTTGAGTGATTTATCTTCACCTATATTTGAAGATTCTTCTTCTAGCGTACCTAATCAAAAGAGCCAATCGCTTATTTCATTTGATCTAAGGGAAGCATTGGGAGATGAAAGCTCCAAAAAACTACTGCAGACATGCGCTGCATCATGGCTGTATTCCCGTTGGTTACTACTAGGGAATATTGTGTTCATACAAATAATTTCAGAGCTATGCGTTTTCCAAGTAATAGGAGCTAAAAGGGTCTCAGTAGAGACCGATATACTCCTGATTCATCAAGTGAAATTAGTTCTTCATACCCCGGAGGTTTCTGACATTTCAGAGCATATAAATCAGGCTATCATTGTCAACGGGGAAACAAAGGTATCTTTATCTTTGCCGTCAAATGTGACTTCTGATGGGCTGACCCAAACAGATTTGTCTATGGTGGAACTCAGGGAGAAGGGCACTAAGGCTAGTGTACCTAATAATATTTCAAAATTGGGTGGTCTTTCTAAAGAATATGCAGTTTTGAAGGATATAATTTTGTCTTCAGTAAAAAATGATATATTAAGGTATGCTTTGTCTGTTGGATATTTCACCATGTGCACTTGTAACACTTCTCAATTGTATTTTCAACTGCGTGATGAGCTTTCTCAGAGGATGGTTGCCGCCTTATTGAATCTTATGGATGGAATTTGTAGAACTGAAGGGTTATTTCTTATTGCTGCCACCAACAGGCCTGACAATATTGAGCCTGCTCTGAGACGGCCTGGAAGATTTGATAAAGAAATTGAAATTGAGTTATCAGTGGCTTCGAACTCGTGTATGATAGGTTCAACTTCTGACTATATGGAACTATTTCCTGATACTGGTGAAGATCATAATTTGAAAGTAACTTGTGAAGATTTTCAGAAGGCAAGAATGATAATAAGACCCAGTGCCATGACAGAGGTAATCCTGGAGGTTCCTAAGGTTAAGTGGGAAGATGTTGGTGGCCAAAAAGATGTCAAAGCCCAGCTGATGCAAGCCGTAGAATGGCCCCAGAAGCACCATGATGCATTGAAACGTATTGGGACTCACCCTCCAAAAGGCGTGTTGATGTTTGGGCCTCCAGGTTGTAGCAAAACTCTTATGGCACGTGCAGTTGCTTCTGAAGCAGCATTGAACTTTCTGGCAGTTAAGGGTCCGGAACTCTTCAGCAAATGGGTAGATGAATCTGAGAAGGATGTCAAATCTTTGTTTGCAAAAGCAAGGGCCAATGCCCCATCTATTAGAGCTAATGTCACTGTCATTGCTACTACAAATTGGCCAGACAAGATTGATCCTGCCCTTTTAAAACCAGGACGCTTTGACCGTATGCTGTATGTGGGACCTCCAAATGAGATAGACAGAGAAGAGATATTCCGCATCCACTTGCATAAAATCCCGTGTGATTCTAATGTAGGGCTAAAAGAACTGGCTTCTCTTACAGGCGGTTGTACTGGTGCTGACATTTCACTAATATGCCGGGTGTTAGCTGTTGCAGCTATTGAGGATCATGTGCCTCGAAGCATAATCAATGGAGATGACCGGTCCTACTCACTTAGCCGCAGTTACTCTTGTAAGTCAGAATGTAGATTCTGGACTCGTGTCAGAAATAGAAAATCAGATCAAGCAGACAGTGAATGCCTACGTGCTCCTGCTTTCCAAGTGGTGGAATCCTTAGACGAGTTGTGGAGGAGCGTGCAGCTAACGCGCCGCCAAATGCAGGTGGAGGGAAAATCACGAGATCTTGAAACACTCACTCTCAAATAGGACACGAATTGGTTCTCGAGATGGGAAGAGGAACTCCCATCTCCAGACGAACTCATGCCCCTCTCCCAAACCCTAATCACTCCCGATCTTGCCATGGCTTTTGATATCCGAAATCCTCATGTCAATACCTCACAACAACTCCCTCTGCCTCCTCCTCCGTCAAATCCTCTGCCTTCTCCTGGGAATCCCACTCACCCAAACTCCACGGACTTTGCTGATTCCGGTGAATTGGGTTCTGGTATTGGAGGCGAGGAACCCGCTCGCACTCTGAAGCGTCCTCGCCTCGTTTGGACTCCACAACTCCACAAGAGGTTTGTGGATGCTGTGGCACACTTGGGGATAAAGAATGCTGTTCCCAAGACTATAATGCAGTTGATGAGTGTGGATGGGTTGACCAGGGAAAACGTGGCTAGCCACTTGCAGAAATACCGGCTTTATCTGAAGCGCATGCAAGGATTGTCCGGTGGTGGCAGTGGCGGAGGTAGTGGCGGAGGAGGAGGTGTTCCATTGGCTGCTTCAGCGGATCCTGCCACTGACCATTTGTTTGCTAGCTCCCCCGTGCCACCCCATTTCTTGCATCCAACTAGGCCTAATTCGGATCATTTCTTGCCGTTTGTGCCGGTCCAGACTCTGCAGCACCACCATCACCAGCAGCACATGGCGGCGGCGGCGGCCGTGCATCCACAGTTGCAACCACAGTATCACAGACAGGTGGGACATTTTGGGTCACCACCAAATGGGCAGTTTGAGCATCCCTTTCTAACAAGGCAGTCTCAGGCTCAGCCACTTCACAGGATGGGAGCCCCAATGCACAATCCAGTAACTGCTAATTATGTGGAGGACATGGAATCGGCCAACGCGGTAGGAGCGAGAAAGGTTCTTACTTTGTTTCCTACTGGGGATGATTGA 4644 0.4505 MRNLVSPRFSGICDAVVEGGKEKKKNPAAEGRNRRALGDIGNLVNVKEVEVKPNRPITRSLSRSLYDYLLMVIAVLILNLILSSCRSFRSFCAQLLANGAAAAAENNKKQVCATVDAPLPVVDGVVAAKRVAPKPAQRKVTVKPKPEEVIDISSEEEVEKEKKSATKKKEGDANSKKKSRTLTSVLTARSKVACGLTKKPKEQIVDIDAADTENELAAVEYIDEIYKFYKLVEHENRPHDYMDSQPELNERMRAILVDWLIDVQGKFDLSLEALYLTINIIDRFLAVKTVPRRELQLVGISAMLLASKYEEIWPPEVNDFVCLSDRAYTHEQILVMEKTLLNKLEWTLTVPTTYVFLVRFIKASIPDEKLENMAYFLSELGSMHYATIMYCPSMVAASAVLAARCTLNKNPTWNDTLNLHTGYSEAQLMDCARLLASFHSMAGNGKLQGKKHVKTQSRLSTSEVASPRTPSLTPNRDSDASEEASKIFPSFIGKSAFVGDISAVKLKSKGCKIWLSEPSMVSIASSRKKNLDSDSFPLKSLTKECARCHGLDARNTSNDGAVNYFAVATVFPSSKNQCLSSLVNEKNQPHSTEDNSLLAYECKELYLQLAPLKNGLPMKISNSSPMDFSAAKSHHQFGNENVASPTTPNGLKLSSLSDLSSPIFEDSSSSVPNQKSQSLISFDLREALGDESSKKLLQTCAASWLYSRWLLLGNIVFIQIISELCVFQVIGAKRVSVETDILLIHQVKLVLHTPEVSDISEHINQAIIVNGETKVSLSLPSNVTSDGLTQTDLSMVELREKGTKASVPNNISKLGGLSKEYAVLKDIILSSVKNDILRYALSVGYFTMCTCNTSQLYFQLRDELSQRMVAALLNLMDGICRTEGLFLIAATNRPDNIEPALRRPGRFDKEIEIELSVASNSCMIGSTSDYMELFPDTGEDHNLKVTCEDFQKARMIIRPSAMTEVILEVPKVKWEDVGGQKDVKAQLMQAVEWPQKHHDALKRIGTHPPKGVLMFGPPGCSKTLMARAVASEAALNFLAVKGPELFSKWVDESEKDVKSLFAKARANAPSIRANVTVIATTNWPDKIDPALLKPGRFDRMLYVGPPNEIDREEIFRIHLHKIPCDSNVGLKELASLTGGCTGADISLICRVLAVAAIEDHVPRSIINGDDRSYSLSRSYSCKSECRFWTRVRNRKSDQADSECLRAPAFQVVESLDELWRSVQLTRRQMQVEGKSRDLETLTLKXDTNWFSRWEEELPSPDELMPLSQTLITPDLAMAFDIRNPHVNTSQQLPLPPPPSNPLPSPGNPTHPNSTDFADSGELGSGIGGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGSGGGSGGGGGVPLAASADPATDHLFASSPVPPHFLHPTRPNSDHFLPFVPVQTLQHHHHQQHMAAAAAVHPQLQPQYHRQVGHFGSPPNGQFEHPFLTRQSQAQPLHRMGAPMHNPVTANYVEDMESANAVGARKVLTLFPTGDD 1547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0790 1547 SMART cyclin_7 355 437 IPR013763 -
Lele05g0790 1547 SMART cyclin_7 258 342 IPR013763 -
Lele05g0790 1547 Gene3D - 224 447 - -
Lele05g0790 1547 MobiDBLite consensus disorder prediction 1290 1308 - -
Lele05g0790 1547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 970 1161 IPR027417 -
Lele05g0790 1547 CDD CYCLIN 252 341 IPR013763 -
Lele05g0790 1547 CDD AAA 997 1105 - -
Lele05g0790 1547 MobiDBLite consensus disorder prediction 454 478 - -
Lele05g0790 1547 ProSitePatterns Cyclins signature. 253 284 IPR006671 -
Lele05g0790 1547 SMART Cyclin_C_2 351 470 IPR004367 -
Lele05g0790 1547 Pfam Myb-like DNA-binding domain 1341 1389 IPR001005 -
Lele05g0790 1547 CDD CYCLIN 349 435 IPR013763 -
Lele05g0790 1547 Gene3D - 238 349 - -
Lele05g0790 1547 Gene3D - 1074 1105 IPR027417 -
Lele05g0790 1547 Pfam Cyclin, C-terminal domain 351 456 IPR004367 -
Lele05g0790 1547 FunFam G2/mitotic-specific cyclin-1 339 465 - -
Lele05g0790 1547 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 1338 1390 IPR006447 GO:0003677
Lele05g0790 1547 FunFam Two-component response regulator 1333 1396 - -
Lele05g0790 1547 Pfam Cyclin, N-terminal domain 224 348 IPR006671 -
Lele05g0790 1547 Gene3D - 852 914 IPR027417 -
Lele05g0790 1547 PANTHER AAA-FAMILY ATPASE 861 1071 - -
Lele05g0790 1547 SUPERFAMILY Cyclin-like 350 448 IPR036915 -
Lele05g0790 1547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 862 915 IPR027417 -
Lele05g0790 1547 Gene3D - 1334 1396 - -
Lele05g0790 1547 MobiDBLite consensus disorder prediction 1282 1332 - -
Lele05g0790 1547 Gene3D - 1106 1163 - -
Lele05g0790 1547 SMART AAA_5 1008 1107 IPR003593 -
Lele05g0790 1547 MobiDBLite consensus disorder prediction 1396 1417 - -
Lele05g0790 1547 SUPERFAMILY Homeodomain-like 1334 1394 IPR009057 -
Lele05g0790 1547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1342 1393 IPR017930 -
Lele05g0790 1547 MobiDBLite consensus disorder prediction 449 479 - -
Lele05g0790 1547 CDD AAA 860 915 - -
Lele05g0790 1547 Gene3D - 970 1071 IPR027417 -
Lele05g0790 1547 Pfam ATPase family associated with various cellular activities (AAA) 862 915 IPR003959 GO:0005524|GO:0016887
Lele05g0790 1547 Pfam ATPase family associated with various cellular activities (AAA) 1073 1104 IPR003959 GO:0005524|GO:0016887
Lele05g0790 1547 Pfam ATPase family associated with various cellular activities (AAA) 1012 1071 IPR003959 GO:0005524|GO:0016887
Lele05g0790 1547 SUPERFAMILY Cyclin-like 213 348 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0790 Lele-ChrLele05 4675624 4690604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0790 14 436 Core Cell Cycle Gene Families AT4G37490 52.448 3.25e-123 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele05g0790 Cyclin_N 8.7e-42 CL0065
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0790 05 4675624 4690604 Lele05g0790 05 4675624 4690604 ECH
Lele05g0790 05 4675624 4690604 Lele07g0827 07 4748052 4748975 hybridization
Lele05g0790 05 4675624 4690604 Lele08g0631 08 3808231 3809151 hybridization