Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0774 ATGTCAAATAGCAGAAACACTCATTGGTGTTATAGTTGCAGAAGGCCAGTTCAGCTGCGGAGGCGAGATGTGGTTTGCCCCAATTGTAATGAGGGGTTTATTCAAGAACTTAATGATATGGTCATCAACCCGCTAGAATTATTTGGACTAGACAATGTTGAAGAACGTGACCGGAGGTTCAGAATTATGGAATCCTTCTCTGCCTTTATGAGGCATCGACCAGTAAATAGAAGCCATAGGCATGACATCATAGTTGGATCAGATTCAATTCCTGAAAATGGTCCAGGGTATGCTCCTTTGCTGCTCTTTGGTGGCCAGATTCCTGTCAGATTGTCTGGACATGGTGGCTTCGAAGCTCTTTTCAATGGGACTCCTGGAATTGGTCTAATGCAAGGCAATACAGGTGATTATTTTATTGGTCCCGGACTGGAAGAACTGTTCGAGCAGCTTTCAGCTAATGACAGGCGAGGTCCTCCTCCAGCTTCGAGGTCCTCAATAGATGCAATGCCTACTATTAAGATCACACAAAAGCTTCTTCGGTCAGACTCACATTGTCCAGTATGCCAAGATAAGTTTGAGCTGGGGTCTGAAGTAAGGCAAATGCCATGTAAACATATATATCACTCAGACTGTATTGTTCCCTGGTTGGTGCAGCATAATTCCTGCCCTGTTTGTCGCCAGGAGTTGCCACCACAAGGATTGAGCAGCAACCGTGGCTCCAATGGTAGAACTAGAAGCAGTTCTGATAGTAATAATGGCAATGGAAGGGTAAGTGGTAGGGAGAACCAGGGAAGGCGGAACCCATTCTCCTATTTTTGGCCGTTCCGTTCATCTAATTCGAGCAACAACGGAGCAGGGGGAAGCAGCTCACCTACACAGCCTATCCCTGAGAATAGCCACCACACTGGTTATTCCGGATGGCCATTTGAGTAA 933 0.462 MSNSRNTHWCYSCRRPVQLRRRDVVCPNCNEGFIQELNDMVINPLELFGLDNVEERDRRFRIMESFSAFMRHRPVNRSHRHDIIVGSDSIPENGPGYAPLLLFGGQIPVRLSGHGGFEALFNGTPGIGLMQGNTGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPTIKITQKLLRSDSHCPVCQDKFELGSEVRQMPCKHIYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGSNGRTRSSSDSNNGNGRVSGRENQGRRNPFSYFWPFRSSNSSNNGAGGSSSPTQPIPENSHHTGYSGWPFE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0774 310 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Lele05g0774 310 CDD RING-H2_RNF126_like 185 226 - -
Lele05g0774 310 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Lele05g0774 310 MobiDBLite consensus disorder prediction 230 310 - -
Lele05g0774 310 Pfam Ring finger domain 184 226 IPR001841 -
Lele05g0774 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Lele05g0774 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 230 - -
Lele05g0774 310 SUPERFAMILY RING/U-box 165 232 - -
Lele05g0774 310 SMART ring_2 185 225 IPR001841 -
Lele05g0774 310 MobiDBLite consensus disorder prediction 272 300 - -
Lele05g0774 310 FunFam E3 ubiquitin-protein ligase RING1-like 148 232 - -
Lele05g0774 310 MobiDBLite consensus disorder prediction 230 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0774 Lele-ChrLele05 4574252 4575184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0774 120 230 C3H Transcription Factor Family AT5G01980 42.609 3.96e-26 105