LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele05g0733	ATGGGAAGGCCTCCTTGCTGTGAGAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAAGAGGATATCATTCTTGTTTCTTACATCCAAGAACACGGTCCGGGAAATTGGAGATCAGTTCCTATTAATACTGGGTTGTCGAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACGAACTACCTCAGGCCAGGAATCAAGAGGGGAAACTTCACTCCCCATGAGGAAGGAATGATAATTCATCTGCAAGCTCTCCTGGGTAACAAATGGGCAGCCATAGCTTCGTACCTTCCTCAAAGGACAGATAACGATATAAAGAACTATTGGAACACCCATCTGAAGAAGAAGCTGAAAAAACTTCAAACAGGAATGGACCCCCACCTGGCAGCAAACTCCACAACAACTACTCAGATTGCTTCAAAAGGCTTTAATGAGAGAGAGAGTTCAGATATGATGGGAAATAACCATGGCTCATCTCAAAGGTTAAGTACTCAGTCTCAATCATCCACCTACGCATCGAGCACTGAGAACATCTCTCGCCTCTTAGAAGGTTGGATGAGATCCTCTCCAAAGCCAGACACAAGTAATAATCTTCTCAAAGCAACCACCCATCAAGATCACAAAGAGCTTCAGAGCAACATCGAAAATGGCAGTAACATGGTGAAGTCTGCTCTAAGTTTGATGTCCAACCAAACCAAAGACAAGCGAGAAGATCAGGGCGGTGGTGGTGATATGATGTCGCGTGAAGAGTTTGATTCCATTTTGTCTTATGAGAACCTTAATAATGCTGCTTGGGACAAGTCCACGGGCGATTCTATGCCTCCAACTCAGATGATTTCTGAACCTACTGCTGATGATGATGACAAGGTTCGTGTTATGGCTCATGACGAGAGAAATAAGCAAAGATATGAGAACAGTAGTACTGCTGATCCTCCATTGTCAGTTCTTGAGAAGTGGCTGTTAGATGAAAATGTTGGTCATCAAGTAGAGGAGATGATGGAATTATCCCTTACTTTCTAA	1017	0.4405	MGRPPCCEKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGMDPHLAANSTTTTQIASKGFNERESSDMMGNNHGSSQRLSTQSQSSTYASSTENISRLLEGWMRSSPKPDTSNNLLKATTHQDHKELQSNIENGSNMVKSALSLMSNQTKDKREDQGGGGDMMSREEFDSILSYENLNNAAWDKSTGDSMPPTQMISEPTADDDDKVRVMAHDERNKQRYENSSTADPPLSVLEKWLLDENVGHQVEEMMELSLTF	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele05g0733	338	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	116	IPR017930	-
	Lele05g0733	338	MobiDBLite	consensus disorder prediction	145	169	-	-
	Lele05g0733	338	Gene3D	-	69	141	-	-
	Lele05g0733	338	FunFam	MYB-related transcription factor	13	66	-	-
	Lele05g0733	338	MobiDBLite	consensus disorder prediction	279	310	-	-
	Lele05g0733	338	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Lele05g0733	338	FunFam	Transcription factor MYB60	68	139	-	-
	Lele05g0733	338	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	230	-	-
	Lele05g0733	338	MobiDBLite	consensus disorder prediction	281	303	-	-
	Lele05g0733	338	CDD	SANT	69	111	IPR001005	-
	Lele05g0733	338	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Lele05g0733	338	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	65	IPR017930	-
	Lele05g0733	338	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Lele05g0733	338	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Lele05g0733	338	SMART	sant	66	114	IPR001005	-
	Lele05g0733	338	SMART	sant	13	63	IPR001005	-
	Lele05g0733	338	CDD	SANT	16	61	IPR001005	-
	Lele05g0733	338	Gene3D	-	13	66	-	-
	Lele05g0733	338	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele05g0733	Lele-ChrLele05	4306443	4307856	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele05g0733	1	119	MYB Transcription Factor Family	AT5G62470	89.916	2.65e-81	249

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele05g0733		Myb_DNA-binding	7e-15	CL0123