Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0725 ATGAGTTTTGAGCACTTCATAAATGGAGGCGACGGTTTCCGCGGGGCTATAAAACCATTACCCTCCACCATTTTTGGGGCCATGGGTAGTCATCCCGGTGAGATCGAGTCTTGCAAATCTGAGATTGGATTTCAGATTCTGAACCCTTCCTTCATGGAGACCAGAGCAGCCGGTAAAAGCGTCGGTGAAGCCGACGGCAATTTCCGGGTCGAGACGGACGGCCTGTCCTTGAAACTGAGTAAAGAAGCGGAGGCTAAGAGGCCCGATGCCGGCAAGAGTGGCCACACTAAGCTCTGTGCCAGAGGCCACTGGAGGCCCGGTGAAGACGCAAAGCTCAAAGAGCTGGTGGCTCAGTATGGTCCTCAAAACTGGAACTTGATCGCCGCGCATCTCGAAGGACGATCAGGTAAGAGTTGCAGATTGAGGTGGTTTAACCAGCTGGATCCTAGGATCAACAGAAGGGCTTTCTCCGAGGAAGAAGAGGAGAGGCTGTTGGCTGCTCATAAGGCATATGGTAACAAGTGGGCTCTGATTGCGAGGGTGTTCCCGGGGAGGACAGATAATGCAGTGAAGAACCACTGGCACGTGATCATGGCGAGGAGGCAGAGAGAGCAGTCACACGTTTTCAGAAGGAGGAAACCCACTTCTGAGAGCAATATTCCGAGGGGATTAAAACTCAGTCTAACCAACAATACGGCCAGTGAATCGAGCATCTCATGCACCAGAGACGAGTCTGCTTCAACATGCACTAATCTCTCCCTCACGCCCTCGTCCGCCAAACCTTCTCCTTTTTTCTCTAAACTGAGCCCAGTTCAGAGCTTTCAAGTTCATGGAACACCGATCGTTGCAGGGGTAAGGGGTGGAGGCAGGGGAAAGGGGAAGGGTGAGGAGCAATCGAATCATACTTCGGATTCGAAATCGGAAGTATCGGCGAGTGATTCAGTGGGAACCGACAGGAAGGGTTTGTCGCATTCAGGGGAAAGTGAAAACGTGGGCGATAAGATTGAGGTGCCGTTCATCGATTTTCTGGGGGTGGGAACTACCGCATAA 1050 0.5219 MSFEHFINGGDGFRGAIKPLPSTIFGAMGSHPGEIESCKSEIGFQILNPSFMETRAAGKSVGEADGNFRVETDGLSLKLSKEAEAKRPDAGKSGHTKLCARGHWRPGEDAKLKELVAQYGPQNWNLIAAHLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLLAAHKAYGNKWALIARVFPGRTDNAVKNHWHVIMARRQREQSHVFRRRKPTSESNIPRGLKLSLTNNTASESSISCTRDESASTCTNLSLTPSSAKPSPFFSKLSPVQSFQVHGTPIVAGVRGGGRGKGKGEEQSNHTSDSKSEVSASDSVGTDRKGLSHSGESENVGDKIEVPFIDFLGVGTTA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0725 349 SMART sant 100 149 IPR001005 -
Lele05g0725 349 SMART sant 152 200 IPR001005 -
Lele05g0725 349 ProSiteProfiles Myb-like domain profile. 101 147 IPR001005 -
Lele05g0725 349 MobiDBLite consensus disorder prediction 279 333 - -
Lele05g0725 349 Pfam Myb-like DNA-binding domain 101 147 IPR001005 -
Lele05g0725 349 Pfam Myb-like DNA-binding domain 153 196 IPR001005 -
Lele05g0725 349 MobiDBLite consensus disorder prediction 304 319 - -
Lele05g0725 349 Gene3D - 101 152 - -
Lele05g0725 349 FunFam MYB transcription factor 101 152 - -
Lele05g0725 349 ProSiteProfiles Myb-like domain profile. 148 198 IPR001005 -
Lele05g0725 349 CDD SANT 104 145 IPR001005 -
Lele05g0725 349 PANTHER MYB PROTEIN-RELATED 101 290 - -
Lele05g0725 349 SUPERFAMILY Homeodomain-like 101 194 IPR009057 -
Lele05g0725 349 Gene3D - 154 221 - -
Lele05g0725 349 MobiDBLite consensus disorder prediction 231 262 - -
Lele05g0725 349 CDD SANT 164 195 IPR001005 -
Lele05g0725 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 148 202 IPR017930 -
Lele05g0725 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 147 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0725 Lele-ChrLele05 4272150 4273465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0725 3 348 MYB Transcription Factor Family AT5G17800 42.582 9.60e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele05g0725 Myb_DNA-binding 1.9e-14 CL0123