Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0701 ATGGACAGGCTCATAAGATTAGATCCATCAAACATTGTTCCTATCAGGGTTGAAGCAGGGCAGAAATGTGTTGGCCATATAACATTACGCAACGTTATGTACACCATGCCCGTAGCCTTCAGGCTTCAACCATTGATCAAGACTCGTTACACAGTGAAGCCTCAATCTGGAATTATATCTCCTTTGGCCACACTTACACTGGAGATCATTTATCATCTTCCACCAGGAACTATTCTTCCTCATTCTTATCCTCACTCCGATGATTCTTTCCTTCTTCACAGTGTGGTGGTTCCTGGGGCTGCGATTAAAGAGTCTTCCTCTATGTTTGATTCTGTTCCAAGCGACTGGTTCGCCACCAAGAAGAAGCAGGTGTTTATAGACAGTGGCATCAAGATCATGTTTGTGGGTTCGCCGATTTTGGCTCAACTTGTTGCAGATGGTTCCATGGATGACATCAGAGAAGCCCTGGAACGAAGCGACCCGACATGGAAGGCTTCAGACTCCATGGACTCACAAGGTCAAACTTTACTTCATTTGGCTATTTCACACAGCAGACCGGATCTTGTTCAATTACTCCTCGAATTCAAGCCGGATATAGAAGCTCCGAATCGTTCTGGTTCAACCCCACTTGAGGCTGCGTCTTCCTCCGGACAATCCTTGATAGCTGAGCTTCTATTAGCTCACAAGGCCAACACTGAACGATCGGAATCATCCGTTTTGGGGCCGATTCACCAGGCTGCTAAAGGAGGACACGTGGAGGTTCTTAGGCTTCTTTTACTGAAAGGAGCTAAAGTGGACTCTAAAGCGAAGGATGGTAGCACGGCTTTGCACCTCGCAGTTGAAGAACGAAGACGAGATTGCGCTAGACTTCTGTTGGCTAACGGTGCCAGAACCGACGTTCGCAACGCCAGAGACGGTGACACACCTTTACACGTAGCCGCATCCACCGGCGACGAGAACATGGTCAAGCTATTGCTACAAAAGGGTGCGAATAAGGAAGTGAGAAATGGGTTGGGGAAAACTACGTACGACGTTGCCGCCGAGAATGGATATAATCGTCTCTTTGACGCGCTTAAACTAGGGGACGATCTCTGCGTGGCGGCGAGAAAAGGGGAGGTGAGAACCATACAGAGGCTGATCGAGAACGGAGCGTGCATTAATGGGAGAGACCAACACGGCTGGACAGCGCTTCACAGAACCGCTTTCAGAGGACGAACGGATGCGGTTCGAGCTCTGCTAGAGAAAGGGGTGGATGTGGATGCTAAGGACGAGGATGGGTATACGGCGTTGCATTGCGCGGCGGAGTCAGGTCATGCCGACGTGACGGAGCTGCTGGTGAAGAAAGGAGGAGATGTAGAAGCGAGGACCAATAAAGGTGTGACCGCGTTGCAAATAGCAGAGTCGCTGCACTATGTAGGGATCACGAGGATACTAGTCAGCGGCGGGGCTAGTAGGGAGAACAACGGTCAGATTCCGACAACGCTGGCGAATTTTCCGTTCCGGAAACAAATGGAGGGTGGGGAGAAGAAGAAGAAGAAGATAATCGGAAACAGAGGGCTTCGGGGTAGCTTCGATCGCTCGGTGGCTCTAGCTGTGATGTAA 1602 0.5012 MDRLIRLDPSNIVPIRVEAGQKCVGHITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATLTLEIIYHLPPGTILPHSYPHSDDSFLLHSVVVPGAAIKESSSMFDSVPSDWFATKKKQVFIDSGIKIMFVGSPILAQLVADGSMDDIREALERSDPTWKASDSMDSQGQTLLHLAISHSRPDLVQLLLEFKPDIEAPNRSGSTPLEAASSSGQSLIAELLLAHKANTERSESSVLGPIHQAAKGGHVEVLRLLLLKGAKVDSKAKDGSTALHLAVEERRRDCARLLLANGARTDVRNARDGDTPLHVAASTGDENMVKLLLQKGANKEVRNGLGKTTYDVAAENGYNRLFDALKLGDDLCVAARKGEVRTIQRLIENGACINGRDQHGWTALHRTAFRGRTDAVRALLEKGVDVDAKDEDGYTALHCAAESGHADVTELLVKKGGDVEARTNKGVTALQIAESLHYVGITRILVSGGASRENNGQIPTTLANFPFRKQMEGGEKKKKKIIGNRGLRGSFDRSVALAVM 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0701 533 Pfam Ankyrin repeats (many copies) 403 446 IPR002110 GO:0005515
Lele05g0701 533 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Lele05g0701 533 SMART ANK_2a 172 201 IPR002110 GO:0005515
Lele05g0701 533 SMART ANK_2a 458 487 IPR002110 GO:0005515
Lele05g0701 533 SMART ANK_2a 271 300 IPR002110 GO:0005515
Lele05g0701 533 SMART ANK_2a 238 267 IPR002110 GO:0005515
Lele05g0701 533 SMART ANK_2a 425 454 IPR002110 GO:0005515
Lele05g0701 533 SMART ANK_2a 205 234 IPR002110 GO:0005515
Lele05g0701 533 SMART ANK_2a 359 388 IPR002110 GO:0005515
Lele05g0701 533 SMART ANK_2a 392 421 IPR002110 GO:0005515
Lele05g0701 533 SMART ANK_2a 305 334 IPR002110 GO:0005515
Lele05g0701 533 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Lele05g0701 533 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Lele05g0701 533 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Lele05g0701 533 PRINTS Ankyrin repeat signature 408 422 IPR002110 GO:0005515
Lele05g0701 533 ProSiteProfiles Ankyrin repeat region circular profile. 172 204 - -
Lele05g0701 533 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Lele05g0701 533 ProSiteProfiles Ankyrin repeat profile. 242 270 IPR002110 GO:0005515
Lele05g0701 533 Gene3D Immunoglobulins 1 126 IPR013783 -
Lele05g0701 533 Pfam Ankyrin repeats (3 copies) 160 231 IPR002110 GO:0005515
Lele05g0701 533 Pfam Ankyrin repeats (3 copies) 243 336 IPR002110 GO:0005515
Lele05g0701 533 Gene3D - 361 429 IPR036770 -
Lele05g0701 533 ProSiteProfiles Ankyrin repeat region circular profile. 242 266 - -
Lele05g0701 533 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Lele05g0701 533 SUPERFAMILY Ankyrin repeat 168 490 IPR036770 -
Lele05g0701 533 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Lele05g0701 533 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Lele05g0701 533 SUPERFAMILY PapD-like 2 150 IPR008962 -
Lele05g0701 533 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Lele05g0701 533 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Lele05g0701 533 Gene3D - 135 360 IPR036770 -
Lele05g0701 533 Gene3D - 430 480 IPR036770 -
Lele05g0701 533 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Lele05g0701 533 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Lele05g0701 533 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 140 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0701 Lele-ChrLele05 4140002 4141603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0701 364 483 Ion Channels AT4G32500 29.139 3.09e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0701 05 4140002 4141603 Lele07g0742 07 4193108 4194703 hybridization
Lele05g0701 05 4140002 4141603 Lele08g0540 08 3274833 3276431 hybridization