Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0689 ATGGAAGTATCTGCAGGATCGCAGTGGAGGCTCCACATGGCGCTCCTTCGTGCCTTCATGCTTATCCTTTCAACTCCTTTTGACTTGGCTACATTTGCAGAAGCAAAGGACAATGACTCGAGTAATTTGCCAAATTTGGACATGGATCGACTGTCATTGTTTTGTGACATTTCTGGATACTGGATTAGGGTATGGCAGTCATTTTATTGGAAGTCAAAGAAGCAATTGAAAGATTCCCACTTTCTCAAGCCTCAACTTGTGATGGAAATTCAATTCCAGAAGCCAAAGCAGCAACATCAGAAGGCAGGCATTCCGATCAGCAAAGGAGGGAAATTCAAAGGAAGAGATAGAAGCCGCAGCAACCCAAACAAGTTTGTAGGGGTGAGGCAGAGACCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACAACCCAGAATATAAGAATGTGGCTTGGAACATTTGAGACTGCAGAGGAGGCTGCCAGAGCTTATGATGAAGCTGCTTGCCTTCTTCGAGGAGCCAACACTCGCACCAACTTCATCACCCATGTCTCGTTGGATTCTCCTCTCGCCTCTCGGATTAGAAATCTTCTCAACAACAAAAAATCTGGAAATAAACAACAACAACAACAACAAGATCAAGTGATAGCAGCCTCTGCCTCTAAAGCCAGAAGAACCAATACTAGCACTACTAGTAGTACTAGTGGTAGCAGTACTAGTATTAGTAGTAGTTCTAGCAATAATATTGACAACAATGACAGTTCTCTTTCTAGTGGGACAGTCCAAGATGCCAATCTGTTTGATGATGCTTATAGACCAGATATGAGCAATTGCAAGGAGGAATTCGGGTTGGATTCGACGTCCAATCTTTCATGGGGTGGTTTTGGACCAATTTTTGAACGGTTTTCTTTTGCTCAGGTTTCAGATATTCCTAAGACTGATGGGGGTTTGTCTACTATTGCTGACTTGGATCTTTTAGAATTTGAAAGGATGAAAGTGGAGAGGCAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAATGAAGCTCTTTGGGATCTTCCACCCTTGTTTTTACCTGCTCTTGTGGACCCAATAGGTCTTCTATTTGACTGTGCTTTCTTAATCCTTTTATGCCATTTGGTTTATGAGGATTACAATGAGGTAGAGCCTGCAAAAACAGCCAGCTGGATGATTCCAATAGTTGAACTGTGA 1245 0.4289 MEVSAGSQWRLHMALLRAFMLILSTPFDLATFAEAKDNDSSNLPNLDMDRLSLFCDISGYWIRVWQSFYWKSKKQLKDSHFLKPQLVMEIQFQKPKQQHQKAGIPISKGGKFKGRDRSRSNPNKFVGVRQRPSGRWVAEIKDTTQNIRMWLGTFETAEEAARAYDEAACLLRGANTRTNFITHVSLDSPLASRIRNLLNNKKSGNKQQQQQQDQVIAASASKARRTNTSTTSSTSGSSTSISSSSSNNIDNNDSSLSSGTVQDANLFDDAYRPDMSNCKEEFGLDSTSNLSWGGFGPIFERFSFAQVSDIPKTDGGLSTIADLDLLEFERMKVERQISASLYAINGVQEYMETVQDSNEALWDLPPLFLPALVDPIGLLFDCAFLILLCHLVYEDYNEVEPAKTASWMIPIVEL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0689 414 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Lele05g0689 414 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Lele05g0689 414 CDD AP2 124 180 IPR001471 GO:0003700|GO:0006355
Lele05g0689 414 SUPERFAMILY DNA-binding domain 124 181 IPR016177 GO:0003677
Lele05g0689 414 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Lele05g0689 414 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Lele05g0689 414 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Lele05g0689 414 MobiDBLite consensus disorder prediction 202 260 - -
Lele05g0689 414 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 96 337 - -
Lele05g0689 414 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Lele05g0689 414 FunFam ethylene-responsive transcription factor RAP2-11 123 182 - -
Lele05g0689 414 MobiDBLite consensus disorder prediction 98 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0689 Lele-ChrLele05 4059039 4061555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0689 111 367 AP2-EREBP Transcription Factor Family AT5G19790 43.911 1.67e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele05g0689 AP2 1.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1343 13 23375283 23376101 Lele05g0689 05 4059039 4061555 CCT
Lele05g0689 05 4059039 4061555 Lele05g0689 05 4059039 4061555 ECH
Lele05g0689 05 4059039 4061555 Lele07g0727 07 4101632 4104152 hybridization
Lele05g0689 05 4059039 4061555 Lele08g0524 08 3180518 3182311 hybridization