Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0676 ATGGACATTTGCTGGAATGTATCAGTTTCCGGTGAGTGCAAGCAAGAGCAGGTTCTTTCACCTTCTTGCTCAAAGCTTTCTTCCTTCTCAACCAGCATGGACGATCTCTTCTCTGCTCAGAACACTGAGGTGGATGTCGGATTGGAGTGGCTGTCAGTTTTTGTGGAAGACTGCTTTTCAAGCCAAGCAAGTTGTCTCTTGGCACCTCCAGATGTTCATCACCAAGCTACAACCACAACAACCTCAGAACCTTCAAAACCATTTCAGAGACCTCACCAGAATGAGTCTTCTCTACAAAATTTTGCAGTGCCCGGAAAAGCAAGAAGCAAAAGGAAGAGGCTTTCTGCTCCGAGAGCCAAAGACCCTTTAAGCACATGGTCAAACCATTTAAACCCACAAAACGAAGCCATAAGCTCAGACCCTCCTCTGCTCAAACAAGCTTACTGGTTAGCAGACAGTGAACTCATCGTTCCAAACAAGAAAGAGAAGGAAGAAGAAAGCAAAGAGGCAGAAGAAGAGAAGATGGTGGTGGTGAGGAAGGAGTCGGAGAGTGAGGTCAGCAATGGGCAAAATGCAATGCCAAGGAGGTGCAGTCACTGCTTGGCACAGAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAAACACTGTGCAATGCATGTGGGGTGAGGTACAAATCTGGTAGGTTGTTGCCAGAGTATAGACCAGCCAAGAGTCCAACTTTTGTGAGCTACCTGCACTCAAATTCCCACAAGAAAGTCATGGAAATGAGAATGTCTCTTGTTTCTTCTCCTTCTTCTTCTACTACTACTATTCCCAGGGATGTAAATCAAACTCAGCAAGTTTAG 852 0.4636 MDICWNVSVSGECKQEQVLSPSCSKLSSFSTSMDDLFSAQNTEVDVGLEWLSVFVEDCFSSQASCLLAPPDVHHQATTTTTSEPSKPFQRPHQNESSLQNFAVPGKARSKRKRLSAPRAKDPLSTWSNHLNPQNEAISSDPPLLKQAYWLADSELIVPNKKEKEEESKEAEEEKMVVVRKESESEVSNGQNAMPRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSLVSSPSSSTTTIPRDVNQTQQV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0676 283 MobiDBLite consensus disorder prediction 75 103 - -
Lele05g0676 283 ProSiteProfiles GATA-type zinc finger domain profile. 191 227 IPR000679 GO:0006355|GO:0043565
Lele05g0676 283 Gene3D - 186 261 IPR013088 GO:0006355|GO:0008270
Lele05g0676 283 SMART GATA_3 191 245 IPR000679 GO:0006355|GO:0043565
Lele05g0676 283 Coils Coil 160 181 - -
Lele05g0676 283 MobiDBLite consensus disorder prediction 160 181 - -
Lele05g0676 283 CDD ZnF_GATA 196 243 IPR000679 GO:0006355|GO:0043565
Lele05g0676 283 ProSitePatterns GATA-type zinc finger domain. 197 222 IPR000679 GO:0006355|GO:0043565
Lele05g0676 283 FunFam GATA transcription factor 179 272 - -
Lele05g0676 283 MobiDBLite consensus disorder prediction 160 192 - -
Lele05g0676 283 PANTHER GATA TRANSCRIPTION FACTOR 15 264 - -
Lele05g0676 283 Pfam GATA zinc finger 197 231 IPR000679 GO:0006355|GO:0043565
Lele05g0676 283 MobiDBLite consensus disorder prediction 75 139 - -
Lele05g0676 283 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 192 255 - -
Lele05g0676 283 MobiDBLite consensus disorder prediction 121 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0676 Lele-ChrLele05 3989437 3990697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0676 20 259 C2C2-Gata Transcription Factor Family AT4G32890 40.486 5.86e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele05g0676 GATA 7.3e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0676 05 3989437 3990697 Lele13g1330 13 23298750 23300591 CCT
Lele05g0676 05 3989437 3990697 Lele14g1236 14 21626156 21630638 CCT
Lele05g0676 05 3989437 3990697 Lele15g1115 15 6458457 6459955 CCT
Lele05g0676 05 3989437 3990697 Lele16g1146 16 6421769 6423707 CCT
Lele05g0676 05 3989437 3990697 Lele05g0676 05 3989437 3990697 ECH
Lele05g0676 05 3989437 3990697 Lele07g0712 07 4032484 4033717 hybridization
Lele05g0676 05 3989437 3990697 Lele08g0509 08 3098810 3100051 hybridization